Metabolic engineering of Methylorubrum extorquens PA1 for cinnamic acid production from ethanol

Developing a microbial platform capable of converting ethanol into value-added products is vital for next-generation carbon recycling biorefineries. Methylorubrum extorquens PA1 is a facultative methylotroph that assimilates ethanol; however, its metabolic potential for aromatic synthesis from ethanol has not been explored. Here, we report the first demonstration of de novo cinnamic acid (CA) production from ethanol in a methylotrophic bacterium. Metabolite profiling revealed that ethanol assimilation was limited by inefficient conversion of acetate to acetyl-CoA. Overexpression of endogenous acetyl-CoA synthase (MeACS1) suppressed extracellular acetate accumulation and improved growth on ethanol. To establish the CA biosynthetic module, we introduced Streptomyces maritimus phenylalanine ammonia-lyase (SmEncP), enabling conversion of L-phenylalanine into CA. To enhance precursor supply, we strengthened the shikimate pathway and phenylalanine biosynthetic pathway by co-expressing feedback-resistant 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (EcAroG fbr ) and chorismate mutase/prephenate dehydrogenase (EcPheA fbr ) from Escherichia coli . Further, endogenous transketolase (MeTkt) was overexpressed to enhance erythrose-4-phosphate supply. The resulting strain PAc1/pTE102-CA3 produced 1.75 mg L⁻ 1 of CA from ethanol in test tube culture, 2.6-fold that obtained from methanol. Fed-batch cultivation with ethanol feeding achieved 52.34 mg L⁻ 1 of CA, demonstrating stable conversion of ethanol to value-added chemicals without notable growth inhibition or acetate accumulation. This study establishes M. extorquens PA1 as a promising chassis for ethanol-based aromatic biosynthesis and suggests that relieving acetyl-CoA bottlenecks is likely critical for efficient ethanol assimilation. This work provides ethanol-driven aromatic biosynthesis in methylotrophs and offers a foundation for further engineering of C₂-assimilating bacteria toward renewable chemical production.

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Journal
Biotechnology for Biofuels and Bioproducts
Published
2026-10-15
DOI
https://doi.org/10.1186/s13068-026-02833-8
Primary Topic
Microbial Metabolic Engineering and Bioproduction
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article
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article

Metabolic engineering of Methylorubrum extorquens PA1 for cinnamic acid production from ethanol

Ryosuke Fujiwara, Yumi Tanaka, Genki Akai, Tomokazu Shirai et al.
Biotechnology for Biofuels and Bioproducts
Microbial Metabolic Engineering and Bioproduction
article

Metabolic engineering of Methylorubrum extorquens PA1 for cinnamic acid production from ethanol

Ryosuke Fujiwara, Yumi Tanaka, Genki Akai, Tomokazu Shirai, Ryosuke Mitsui
article en

Abstract

Developing a microbial platform capable of converting ethanol into value-added products is vital for next-generation carbon recycling biorefineries. Methylorubrum extorquens PA1 is a facultative methylotroph that assimilates ethanol; however, its metabolic potential for aromatic synthesis from ethanol has not been explored. Here, we report the first demonstration of de novo cinnamic acid (CA) production from ethanol in a methylotrophic bacterium. Metabolite profiling revealed that ethanol assimilation was limited by inefficient conversion of acetate to acetyl-CoA. Overexpression of endogenous acetyl-CoA synthase (MeACS1) suppressed extracellular acetate accumulation and improved growth on ethanol. To establish the CA biosynthetic module, we introduced Streptomyces maritimus phenylalanine ammonia-lyase (SmEncP), enabling conversion of L-phenylalanine into CA. To enhance precursor supply, we strengthened the shikimate pathway and phenylalanine biosynthetic pathway by co-expressing feedback-resistant 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (EcAroG fbr ) and chorismate mutase/prephenate dehydrogenase (EcPheA fbr ) from Escherichia coli . Further, endogenous transketolase (MeTkt) was overexpressed to enhance erythrose-4-phosphate supply. The resulting strain PAc1/pTE102-CA3 produced 1.75 mg L⁻ 1 of CA from ethanol in test tube culture, 2.6-fold that obtained from methanol. Fed-batch cultivation with ethanol feeding achieved 52.34 mg L⁻ 1 of CA, demonstrating stable conversion of ethanol to value-added chemicals without notable growth inhibition or acetate accumulation. This study establishes M. extorquens PA1 as a promising chassis for ethanol-based aromatic biosynthesis and suggests that relieving acetyl-CoA bottlenecks is likely critical for efficient ethanol assimilation. This work provides ethanol-driven aromatic biosynthesis in methylotrophs and offers a foundation for further engineering of C₂-assimilating bacteria toward renewable chemical production.

Biotechnology for Biofuels and Bioproducts
RIKEN Center for Sustainable Resource Science (JP)
Affordable and clean energy
Openalex Percentile: Top 24%
Microbial Metabolic Engineering and Bioproduction
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