The genome sequence of grey willow, Salix cinerea L. (Malpighiales: Salicaceae)

We present a genome assembly of the tetraploid Salix cinerea (2 n = 4 x = 76; grey willow; Streptophyta; Magnoliopsida; Malpighiales; Salicaceae). The submitted sequence comprises two assemblies designated haplotype 1 and haplotype 2, with total lengths of 386.72 megabases and 1,004.23 megabases, respectively. Haplotype 1 represents a single monoploid chromosome complement; 87.7% was scaffolded into 19 chromosomal pseudomolecules, including the Z sex chromosome. Haplotype 2 was assembled to scaffold level. The mitochondrial genome assembly has a length of 686.79 kilobases and the plastid genome assembly has a length of 155.63 kilobases. Gene annotation of the haplotype 1 assembly by Ensembl identified 34,898 protein-coding genes. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

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Journal
Wellcome Open Research
Published
2026-10-15
DOI
https://doi.org/10.12688/wellcomeopenres.27945.1
Primary Topic
Chromosomal and Genetic Variations
Type
article
Field-Weighted Citation Impact
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article

The genome sequence of grey willow, Salix cinerea L. (Malpighiales: Salicaceae)

Markus Ruhsam, Peter M. Hollingsworth, Darwin Tree of Life Barcoding Collective, Plant Genome Sizing collective et al.
Wellcome Open Research
Chromosomal and Genetic Variations
article

The genome sequence of grey willow, Salix cinerea L. (Malpighiales: Salicaceae)

Markus Ruhsam, Peter M. Hollingsworth, Darwin Tree of Life Barcoding Collective, Plant Genome Sizing collective, Royal Botanic Garden Edinburgh Genome Acquisition Lab, Tree of Life Core Informatics collective
article en

Abstract

We present a genome assembly of the tetraploid Salix cinerea (2 n = 4 x = 76; grey willow; Streptophyta; Magnoliopsida; Malpighiales; Salicaceae). The submitted sequence comprises two assemblies designated haplotype 1 and haplotype 2, with total lengths of 386.72 megabases and 1,004.23 megabases, respectively. Haplotype 1 represents a single monoploid chromosome complement; 87.7% was scaffolded into 19 chromosomal pseudomolecules, including the Z sex chromosome. Haplotype 2 was assembled to scaffold level. The mitochondrial genome assembly has a length of 686.79 kilobases and the plastid genome assembly has a length of 155.63 kilobases. Gene annotation of the haplotype 1 assembly by Ensembl identified 34,898 protein-coding genes. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

Wellcome Open ResearchVol. 11
Royal Botanic Garden Edinburgh (GB)
Wellcome Trust
Openalex Percentile: Top 15%
Chromosomal and Genetic Variations
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