QSAR Models for Non-Effective Levels of Chemical Substances Using the CORAL Software

A new predictive model is proposed for determining the non-effective levels (NELs) of chemical substances across seven different training and validation splits. The model utilizes optimal molecular descriptors calculated from SMILES (Simplified Molecular Input-Line Entry System) strings, with correlation weights optimized via the Monte Carlo method. To improve predictive accuracy, we implemented this randomized optimization process using a Las Vegas algorithm integrated with the Correlation Intensity Index (CII) as a novel predictive criterion. A comparative analysis shows that incorporating the CII significantly improves model performance: the average coefficient of determination (R2) for the validation set increased from 0.57 ± 0.07 (without CII) to 0.69 ± 0.07 (with CII), underscoring the advantage of this approach, and a similar improvement occurs on the calibration set. This shows that the adopted methodology is useful, which allows us to develop more general models.

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Publication Details

Journal
Environments
Published
2026-10-12
DOI
https://doi.org/10.3390/environments13100554
Primary Topic
Computational Drug Discovery Methods
Type
article
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article

QSAR Models for Non-Effective Levels of Chemical Substances Using the CORAL Software

Andrey Andreevich Toropov, Emilio Benfenati, Alla P. Toropova
Environments
Computational Drug Discovery Methods
article

QSAR Models for Non-Effective Levels of Chemical Substances Using the CORAL Software

Andrey Andreevich Toropov, Emilio Benfenati, Alla P. Toropova
article en

Abstract

A new predictive model is proposed for determining the non-effective levels (NELs) of chemical substances across seven different training and validation splits. The model utilizes optimal molecular descriptors calculated from SMILES (Simplified Molecular Input-Line Entry System) strings, with correlation weights optimized via the Monte Carlo method. To improve predictive accuracy, we implemented this randomized optimization process using a Las Vegas algorithm integrated with the Correlation Intensity Index (CII) as a novel predictive criterion. A comparative analysis shows that incorporating the CII significantly improves model performance: the average coefficient of determination (R2) for the validation set increased from 0.57 ± 0.07 (without CII) to 0.69 ± 0.07 (with CII), underscoring the advantage of this approach, and a similar improvement occurs on the calibration set. This shows that the adopted methodology is useful, which allows us to develop more general models.

EnvironmentsVol. 13(10)
Mario Negri Institute for Pharmacological Research (IT)
Openalex Percentile: Top 13%
Computational Drug Discovery Methods
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QSAR Models for Non-Effective Levels of Chemical Substances Using the CORAL Software — Andrey Andreevich Toropov, Emilio Benfenati, et al. · Environments (2026) | TGRS Research Map | TGRS