Telomere-to-telomere genome assembly of Coprinellus radians

Coprinellus radians has been identified as an important germination-associated fungus of Cremastra appendiculata. However, no reference genome was previously available for this species. In this study, we generated a complete telomere-to-telomere (T2T) genome assembly for C. radians by integrating PacBio HiFi, Oxford Nanopore, BGI short-read, and Hi-C sequencing data. Hi-C interaction mapping anchored 99.36% of the assembled sequences onto 13 pseudochromosomes. Following contaminant removal, gap closure using TGS-GapCloser, and telomere extension, the final assembly consists of 13 gap-free, single-contig chromosomes with telomeric repeats (CCCTAA/TTAGGG) at both ends, yielding a total of 26 telomeres. The resulting high-quality genome is 41.09 Mb (41,092,644 bp) in size, with a contig N50 of 3.36 Mb and a BUSCO completeness score of 96.4%. This gap-free, T2T genome provides a valuable resource for investigating the molecular mechanisms of orchid-fungus symbiosis and the ecological adaptation of wood-decaying fungi.

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Journal
G3 Genes Genomes Genetics
Published
2026-10-09
DOI
https://doi.org/10.1093/g3journal/jkag267
Primary Topic
Genomics and Phylogenetic Studies
Type
article
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article

Telomere-to-telomere genome assembly of Coprinellus radians

Rongchun Han, Yuxue Cheng, Somnuk Bunsupa, Hồng Tố Quyên Dương et al.
G3 Genes Genomes Genetics
Genomics and Phylogenetic Studies
article

Telomere-to-telomere genome assembly of Coprinellus radians

Rongchun Han, Yuxue Cheng, Somnuk Bunsupa, Hồng Tố Quyên Dương, Manman Yu, Xiaohui Tong, Yuxin Shan
article en

Abstract

Coprinellus radians has been identified as an important germination-associated fungus of Cremastra appendiculata. However, no reference genome was previously available for this species. In this study, we generated a complete telomere-to-telomere (T2T) genome assembly for C. radians by integrating PacBio HiFi, Oxford Nanopore, BGI short-read, and Hi-C sequencing data. Hi-C interaction mapping anchored 99.36% of the assembled sequences onto 13 pseudochromosomes. Following contaminant removal, gap closure using TGS-GapCloser, and telomere extension, the final assembly consists of 13 gap-free, single-contig chromosomes with telomeric repeats (CCCTAA/TTAGGG) at both ends, yielding a total of 26 telomeres. The resulting high-quality genome is 41.09 Mb (41,092,644 bp) in size, with a contig N50 of 3.36 Mb and a BUSCO completeness score of 96.4%. This gap-free, T2T genome provides a valuable resource for investigating the molecular mechanisms of orchid-fungus symbiosis and the ecological adaptation of wood-decaying fungi.

G3 Genes Genomes Genetics
Anhui University of Traditional Chinese Medicine (CN), Mahidol University (TH)
Openalex Percentile: Top 22%
Genomics and Phylogenetic Studies
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Telomere-to-telomere genome assembly of Coprinellus radians — Rongchun Han, Yuxue Cheng, et al. · G3 Genes Genomes Genetics (2026) | TGRS Research Map | TGRS