Bridge-Aware Reinforced Compositional Exploration and Decomposition for Biomedical Multi-Hop Answering

Biomedical question answering requires multi-hop reasoning over implicit relationships—e.g., identifying gene-associated diseases to retrieve target drugs. However, closed-book frontier language models achieve only ~14.57% precision on two-hop queries under single-answer prompting and answers drawn from parametric knowledge lack verifiable evidence, limiting their clinical utility. In this paper, we propose Bridge-Aware Reinforced Compositional Exploration and Decomposition (BRACED). A planner trained with Group-Relative Policy Optimization emits sub-queries, and a deterministic type-aware two-hop traversal over PrimeKG converts them into an answer set, so every returned entity is traceable to a graph path. On the BioHopR benchmark, BRACED reaches micro-F1 0.4241 and macro-F1 0.6381, improving over supervised fine-tuning of the same planner by 30.2%. With retrieval and the cap held fixed, five backbones of 1.7B–8B finish within 0.0034 of one another and BRACED reaches its result with one language-model call per question, from a 7B open-weight model that runs on the premises. Two typed hops already reach 95.1% of gold answers on this PrimeKG-derived benchmark: performance is bounded by candidate selection under the cap, not by decomposition quality.

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Publication Details

Journal
Machine Learning and Knowledge Extraction
Published
2026-10-06
DOI
https://doi.org/10.3390/make8100317
Primary Topic
Biomedical Text Mining and Ontologies
Type
article
Field-Weighted Citation Impact
0.00

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article

Bridge-Aware Reinforced Compositional Exploration and Decomposition for Biomedical Multi-Hop Answering

Wilaiporn Lee, Akara Prayote, Luepol Pipanmekaporn, Kanabadee Srisomboon et al.
Machine Learning and Knowledge Extraction
Biomedical Text Mining and Ontologies
article

Bridge-Aware Reinforced Compositional Exploration and Decomposition for Biomedical Multi-Hop Answering

Wilaiporn Lee, Akara Prayote, Luepol Pipanmekaporn, Kanabadee Srisomboon, Warodom Phungjununt
article en

Abstract

Biomedical question answering requires multi-hop reasoning over implicit relationships—e.g., identifying gene-associated diseases to retrieve target drugs. However, closed-book frontier language models achieve only ~14.57% precision on two-hop queries under single-answer prompting and answers drawn from parametric knowledge lack verifiable evidence, limiting their clinical utility. In this paper, we propose Bridge-Aware Reinforced Compositional Exploration and Decomposition (BRACED). A planner trained with Group-Relative Policy Optimization emits sub-queries, and a deterministic type-aware two-hop traversal over PrimeKG converts them into an answer set, so every returned entity is traceable to a graph path. On the BioHopR benchmark, BRACED reaches micro-F1 0.4241 and macro-F1 0.6381, improving over supervised fine-tuning of the same planner by 30.2%. With retrieval and the cap held fixed, five backbones of 1.7B–8B finish within 0.0034 of one another and BRACED reaches its result with one language-model call per question, from a 7B open-weight model that runs on the premises. Two typed hops already reach 95.1% of gold answers on this PrimeKG-derived benchmark: performance is bounded by candidate selection under the cap, not by decomposition quality.

Machine Learning and Knowledge ExtractionVol. 8(10)
King Mongkut's University of Technology North Bangkok (TH)
King Mongkut's University of Technology North Bangkok
Openalex Percentile: Top 23%
Biomedical Text Mining and Ontologies
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Bridge-Aware Reinforced Compositional Exploration and Decomposition for Biomedical Multi-Hop Answering — Wilaiporn Lee, Akara Prayote, et al. · Machine Learning and Knowledge Extraction (2026) | TGRS Research Map | TGRS