Hydrogenimesophilus fermentans gen. nov., sp. nov., a novel anaerobic hydrogen-producing bacterium isolated from lacustrine sediment
Anaerobic lake sediments harbour fermentative micro-organisms that contribute to organic-matter degradation and dihydrogen (H 2 ) turnover. Strain PP1C4 T was isolated from sediment of Lake Pavin, a permanently stratified meromictic lake characterized by active anaerobic microbial processes, including methanogenesis and characterized using a polyphasic taxonomic approach. Cells were strictly anaerobic, Gram-stain-negative, motile rods. Growth occurred at 19–37 °C (optimum, 30 °C), pH 7.0–9.0 (optimum, pH 7.0) and NaCl concentrations of 0–20 g l⁻¹ (optimum, 1 g l −1 ). Glucose fermentation produced propionate and butyrate as major organic end-products together with CO ₂ and H 2 . Phylogenetic analysis placed PP1C4 T within the family Oscillospiraceae , with the highest 16S rRNA gene sequence similarity to ‘ Marasmitruncus massiliensis ’ Marseille-P3646 (95.2%). The genome was ∼3.4 Mb with a DNA G+C content of 45.6 mol%. Maximum blast -based average nucleotide identity and average amino acid identity values between PP1C4 T and the compared taxa were 71.53 and 69.30%, respectively, and in silico DNA–DNA hybridization values ranged from 18.0 to 24.3%. Based on the combined phylogenetic, genomic, phenotypic and chemotaxonomic evidence, strain PP1C4ᵀ represents a novel genus and species within the family Oscillospiraceae , for which the name Hydrogenimesophilus fermentans gen. nov., sp. nov. is proposed. The type strain is PP1C4 T (=DSM 118145 T =CIP 112512ᵀ).
Authors
- Corinne Biderre‐Petit (ORCID: https://orcid.org/0000-0001-7962-4171)
- Damien Courtine (ORCID: https://orcid.org/0000-0002-9162-0111)
- Khaled Fadhlaoui (ORCID: https://orcid.org/0000-0001-9166-5857)
- Jean‐Sébastien Guez (ORCID: https://orcid.org/0000-0002-8736-7758)
- Éric Viollier (ORCID: https://orcid.org/0000-0002-8863-4563)
- Neha Mehta (ORCID: https://orcid.org/0000-0002-7312-6398)
- Maïlysia Scheepers (ORCID: https://orcid.org/0009-0009-5148-626X)
- Ayité Adama Hondegla (ORCID: https://orcid.org/0009-0005-9179-3919)
- Gaëlle Marchal (ORCID: https://orcid.org/0009-0007-1831-2976)
Institutions
- Centre National de la Recherche Scientifique (FR)
- Institut Pascal (FR)
- Université Clermont Auvergne (FR)
- Université Paris Cité (FR)
- AgroParisTech (FR)
- Commissariat à l'Énergie Atomique et aux Énergies Alternatives (FR)
- Université Paris-Saclay (FR)
- Sorbonne Université (FR)
- Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement (FR)
- Laboratoire Microorganismes Génome et Environnement (FR)
- Laboratoire des Sciences du Climat et de l'Environnement (FR)
- Microbiologie Environnement Digestif Santé (FR)
- Institut de minéralogie, de physique des matériaux et de cosmochimie (FR)
- Clermont Auvergne INP (FR)
- Paris-Saclay Food and Bioproduct Engineering Research Unit (FR)
Publication Details
- Journal
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Published
- 2026-10-05
- DOI
- https://doi.org/10.1099/ijsem.0.007304
- Primary Topic
- Anaerobic Digestion and Biogas Production
- Type
- article
- Field-Weighted Citation Impact
- 0.00