Learning is robust, seeing it is hard: attractor dynamics gate the readout of synaptic memory in a whole-brain spiking connectome model

No published work demonstrates reproducible associative learning inside a full connectome-constrained spiking model of the Drosophila brain; independent community attempts consistently report negative results. We show that the obstacle is not the learning rule but the readout. In the MaleCNS connectome (166,700 neurons, brain+VNC), a host-side dopaminergic depression of Kenyon-cell-to-MBON synapses writes robust, odour-specific synaptic memory after a single pairing (N=1), with consolidation that survives interference (protected-fraction ratio 1.737, 7/8 seeds, p=0.0039), a cross-seed depression-pattern cosine of 0.880, and an exactly zero no-reward control (8/8). A pre-registered ablation shows that type-specific spike-frequency adaptation is not required to write this memory (weight-level addressing is comparable within seed variability; 2.7x more edges are updated without it) but is required to see it: on the activity readout the same learning is dominated by attractor-basin switching (SPEC scatter 0.28-10.12). Even after physiological stabilization, the learned signal remains gated downstream: it decodes from synaptic weights (0.71-0.78) and from the postsynaptic drive (0.97-0.99) but only weakly from spikes (0.31-0.64), and seven candidate release mechanisms are negated with pre-registered controls. Degree-preserving null models abolish learning, working memory and benchmark performance, proving the effects are topologically constrained. The canon does not transfer to the FlyWire v783 connectome (connectome-specificity boundary). The framework parsimoniously explains the community's learning failures and defines the physiology required to read out synaptic memory in whole-brain models. Project channel: «Правила игры» — https://t.me/law_of_the_game

Authors

Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-09-30
DOI
https://doi.org/10.5281/zenodo.23067549
Primary Topic
Neurobiology and Insect Physiology Research
Type
preprint
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
preprint

Learning is robust, seeing it is hard: attractor dynamics gate the readout of synaptic memory in a whole-brain spiking connectome model

Andrey A. Smarygin
Zenodo (CERN European Organization for Nuclear Research)
Neurobiology and Insect Physiology Research
preprint

Learning is robust, seeing it is hard: attractor dynamics gate the readout of synaptic memory in a whole-brain spiking connectome model

Andrey A. Smarygin
preprint en

Abstract

No published work demonstrates reproducible associative learning inside a full connectome-constrained spiking model of the Drosophila brain; independent community attempts consistently report negative results. We show that the obstacle is not the learning rule but the readout. In the MaleCNS connectome (166,700 neurons, brain+VNC), a host-side dopaminergic depression of Kenyon-cell-to-MBON synapses writes robust, odour-specific synaptic memory after a single pairing (N=1), with consolidation that survives interference (protected-fraction ratio 1.737, 7/8 seeds, p=0.0039), a cross-seed depression-pattern cosine of 0.880, and an exactly zero no-reward control (8/8). A pre-registered ablation shows that type-specific spike-frequency adaptation is not required to write this memory (weight-level addressing is comparable within seed variability; 2.7x more edges are updated without it) but is required to see it: on the activity readout the same learning is dominated by attractor-basin switching (SPEC scatter 0.28-10.12). Even after physiological stabilization, the learned signal remains gated downstream: it decodes from synaptic weights (0.71-0.78) and from the postsynaptic drive (0.97-0.99) but only weakly from spikes (0.31-0.64), and seven candidate release mechanisms are negated with pre-registered controls. Degree-preserving null models abolish learning, working memory and benchmark performance, proving the effects are topologically constrained. The canon does not transfer to the FlyWire v783 connectome (connectome-specificity boundary). The framework parsimoniously explains the community's learning failures and defines the physiology required to read out synaptic memory in whole-brain models. Project channel: «Правила игры» — https://t.me/law_of_the_game

Zenodo (CERN European Organization for Nuclear Research)
Peace, Justice and strong institutions
Neurobiology and Insect Physiology Research
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.