Biosynthetic origin of anticancer dolastatin 15 reveals a noncanonical NRPS architecture enabling 2-keto acid activation
Elucidating the biological origins and biosynthetic pathways of marine natural products remains a major challenge, particularly for compounds derived from microbial consortia. Here, we identify the marine cyanobacterial genus Dapis as the source of the potent anticancer natural product dolastatin 15 using genome-resolved metagenomics. Reconstruction of two complete and two near-complete genomes provides genome-resolved characterization of the genus Dapis , revealing extensive biosynthetic potential. Genome mining identified the dolastatin 15 biosynthetic gene cluster. Subsequent analyses reconstructed its pathway and uncovered a noncanonical five-domain nonribosomal peptide synthetase module containing an embedded 2-keto acid–activating domain, revealing an unexpected architectural solution for incorporating 2-keto acid-derived hydroxy acid building blocks. Comparative and evolutionary analyses support a model in which this architecture may have arisen through recruitment of keto acid-activating domains and reduction of canonical adenylation domain features. We further biochemically and structurally characterize an O -methyltransferase that catalyzes formation of the characteristic methoxy pyrrolinone moiety, thereby validating a key terminal tailoring step in the proposed biosynthetic pathway. Together, these findings define the biosynthetic logic of dolastatin 15 and expand understanding of substrate activation and assembly-line diversification in nonribosomal peptide biosynthesis.
Authors
- Ranjala Ratnayake (ORCID: https://orcid.org/0000-0002-5980-2070)
- Hsin-Ying Tsai
- Valerie Jean Paul (ORCID: https://orcid.org/0000-0002-4691-1569)
- Yousong Ding (ORCID: https://orcid.org/0000-0001-8610-0659)
- Hendrik Luesch (ORCID: https://orcid.org/0000-0002-4091-7492)
- Tam H D Pham
- Mohamed S. Donia (ORCID: https://orcid.org/0000-0002-9604-2912)
- Jeremiah D. Batucan (ORCID: https://orcid.org/0000-0003-1238-9415)
- Steven D. Bruner (ORCID: https://orcid.org/0000-0002-0522-480X)
- Cheng-Yu Li (ORCID: https://orcid.org/0000-0003-1027-4649)
- Jie Liu (ORCID: https://orcid.org/0000-0002-3100-3074)
- Manyun Chen (ORCID: https://orcid.org/0000-0001-6803-044X)
- Emma K. Ellis (ORCID: https://orcid.org/0000-0002-0819-8598)
- Campbell W. Eckhardt (ORCID: https://orcid.org/0009-0003-5319-9834)
Institutions
- National University of Singapore (SG)
- Princeton University (US)
- University of Florida (US)
- Smithsonian Marine Station (US)
- Duke-NUS Medical School (SG)
- Drug Discovery Laboratory (Norway) (NO)
Publication Details
- Journal
- Proceedings of the National Academy of Sciences
- Published
- 2026-09-29
- DOI
- https://doi.org/10.1073/pnas.2615454123
- Primary Topic
- Microbial Natural Products and Biosynthesis
- Type
- article
- Field-Weighted Citation Impact
- 0.00