When Current Taxids Make Historical Taxa Look New

CORRECTION NOTICE (24 September 2026). This preprint is now published as: Mahjoubi H. When current taxids make historical taxa look new. J Bioinform Comput Biol 24(4):2671004 (2026), https://doi.org/10.1142/S0219720026710046. After publication, the author found that the statement that 17 of the 56 flagged sequences were "genuinely absent" from the MSL39 snapshot "under any identifier" is incorrect for 16 of them: 15 were reassigned in 2024 to child nodes created beneath species already valid at MSL39 (a change not recorded in merged.dmp), and 1 has a predecessor identifier merged after the merged.dmp snapshot used. Only 1 (NC_121511.1) is a genome absent from the contemporary reference. The artifact therefore accounts for 55 of the 56 sequences, not 39; the retagging experiment, Table 2 and the recommendations are unaffected. A corrigendum has been submitted to the journal; its text is attached to this version (Corrigendum_JBCB_Mahjoubi.pdf). The manuscript file is unchanged.

Authors

Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-09-24
DOI
https://doi.org/10.5281/zenodo.22944871
Primary Topic
Genomics and Phylogenetic Studies
Type
preprint
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
preprint

When Current Taxids Make Historical Taxa Look New

Habib Mahjoubi
Zenodo (CERN European Organization for Nuclear Research)
Genomics and Phylogenetic Studies
preprint

When Current Taxids Make Historical Taxa Look New

Habib Mahjoubi
preprint en

Abstract

CORRECTION NOTICE (24 September 2026). This preprint is now published as: Mahjoubi H. When current taxids make historical taxa look new. J Bioinform Comput Biol 24(4):2671004 (2026), https://doi.org/10.1142/S0219720026710046. After publication, the author found that the statement that 17 of the 56 flagged sequences were "genuinely absent" from the MSL39 snapshot "under any identifier" is incorrect for 16 of them: 15 were reassigned in 2024 to child nodes created beneath species already valid at MSL39 (a change not recorded in merged.dmp), and 1 has a predecessor identifier merged after the merged.dmp snapshot used. Only 1 (NC_121511.1) is a genome absent from the contemporary reference. The artifact therefore accounts for 55 of the 56 sequences, not 39; the retagging experiment, Table 2 and the recommendations are unaffected. A corrigendum has been submitted to the journal; its text is attached to this version (Corrigendum_JBCB_Mahjoubi.pdf). The manuscript file is unchanged.

Zenodo (CERN European Organization for Nuclear Research)
Life in Land
Genomics and Phylogenetic Studies
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.