OMC-bench and AtomBit-OMC: task-aligned benchmarks and robust, interpretable machine-learned interatomic potentials for organic molecular crystals

Organic molecular crystals (OMCs) underpin key applications in pharmaceuticals and functional materials, but accurate atomistic simulation remains difficult because OMC stability depends on subtle noncovalent interactions, conformational flexibility, and polymorphism. Although machine-learned interatomic potentials (MLIPs) have advanced rapidly for inorganic materials, progress for OMCs has been constrained by (1) the lack of large, physically realistic training data and (2) the lack of task-aligned benchmarks that probe deployment-relevant behaviour. Here we introduce OMC-bench, a benchmark spanning four practical tasks—large-cell OOD force/stress prediction, lattice dynamics, cocrystal relaxation, and polymorph energy ranking—and an extensive OMC training dataset sampled from near-equilibrium to strongly perturbed regimes. Benchmarking off-the-shelf MLIPs reveals a clear transfer gap, with improved but still task-dependent performance at foundation scale. We train OMC-specialized models and develop AtomBit-OMC, a new, efficient SE(3)-equivariant Cartesian-tensor model with physics-informed gating and coupled scalar–equivariant updates. AtomBit-OMC variants achieve strong cross-task performance on OMC-bench, including the lowest cocrystal structural-recovery failure rate and the best polymorph-ranking metrics, while providing qualitative gate-weight maps that highlight chemically relevant covalent and directional noncovalent contacts in representative OMCs. Together, OMC-bench, the OMC training dataset, and AtomBit-OMC provide a practical foundation for accelerating MLIP development in OMC modelling and discovery.

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Publication Details

Journal
npj Computational Materials
Published
2026-09-21
DOI
https://doi.org/10.1038/s41524-026-02315-3
Primary Topic
Machine Learning in Materials Science
Type
article
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article

OMC-bench and AtomBit-OMC: task-aligned benchmarks and robust, interpretable machine-learned interatomic potentials for organic molecular crystals

Yaolong Zhang, Zhuoying Zhu, Bin Jiang, Muyu Lu et al.
npj Computational Materials
Machine Learning in Materials Science
article

OMC-bench and AtomBit-OMC: task-aligned benchmarks and robust, interpretable machine-learned interatomic potentials for organic molecular crystals

Yaolong Zhang, Zhuoying Zhu, Bin Jiang, Muyu Lu, Weile Jia, Siyu Hu, Jun Jiang, Guangming Tan, Danyang Chen, Fan Yu, Chen Wang, Chengxi Zhao, Yixi Zhang, Linjiang Chen, Man Luo
article en

Abstract

Organic molecular crystals (OMCs) underpin key applications in pharmaceuticals and functional materials, but accurate atomistic simulation remains difficult because OMC stability depends on subtle noncovalent interactions, conformational flexibility, and polymorphism. Although machine-learned interatomic potentials (MLIPs) have advanced rapidly for inorganic materials, progress for OMCs has been constrained by (1) the lack of large, physically realistic training data and (2) the lack of task-aligned benchmarks that probe deployment-relevant behaviour. Here we introduce OMC-bench, a benchmark spanning four practical tasks—large-cell OOD force/stress prediction, lattice dynamics, cocrystal relaxation, and polymorph energy ranking—and an extensive OMC training dataset sampled from near-equilibrium to strongly perturbed regimes. Benchmarking off-the-shelf MLIPs reveals a clear transfer gap, with improved but still task-dependent performance at foundation scale. We train OMC-specialized models and develop AtomBit-OMC, a new, efficient SE(3)-equivariant Cartesian-tensor model with physics-informed gating and coupled scalar–equivariant updates. AtomBit-OMC variants achieve strong cross-task performance on OMC-bench, including the lowest cocrystal structural-recovery failure rate and the best polymorph-ranking metrics, while providing qualitative gate-weight maps that highlight chemically relevant covalent and directional noncovalent contacts in representative OMCs. Together, OMC-bench, the OMC training dataset, and AtomBit-OMC provide a practical foundation for accelerating MLIP development in OMC modelling and discovery.

npj Computational Materials
University of Science and Technology of China (CN), University of New Mexico (US), Chinese Academy of Sciences (CN), Huawei Technologies (China) (CN), University College Birmingham (GB), Institute of Computing Technology (CN), Hefei National Center for Physical Sciences at Nanoscale (CN), University of Chinese Academy of Sciences (CN), University of Birmingham (GB)
Openalex Percentile: Top 25%
Machine Learning in Materials Science
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