The genome sequences of the diplonemid protist Diplonema japonicum YPF1604 and its bacterial endosymbionts Ca. Cytomitobacter primus and Ca. Nesciobacter abundans

We present a genome assembly of the diplonemid Diplonema japonicum YPF1604 (Discoba; Euglenozoa; Diplonemea; Diplonemidae). The genome sequence is 62.30 megabases in span. Most of the assembly is scaffolded into 118 chromosomal pseudomolecules. The multipartite mitochondrial genome was also assembled. The genome sequences of two bacterial endosymbionts, Ca. Cytomitobacter primus and Ca. Cytomitobacter primus, were also assembled.

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Journal
Wellcome Open Research
Published
2026-09-21
DOI
https://doi.org/10.12688/wellcomeopenres.23917.3
Primary Topic
Protist diversity and phylogeny
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article
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The genome sequences of the diplonemid protist Diplonema japonicum YPF1604 and its bacterial endosymbionts Ca. Cytomitobacter primus and Ca. Nesciobacter abundans

Elizabeth Sinclair, Noah Gettle, Eva Stříbrná, Aleš Horák et al.
Wellcome Open Research
Protist diversity and phylogeny
article

The genome sequences of the diplonemid protist Diplonema japonicum YPF1604 and its bacterial endosymbionts Ca. Cytomitobacter primus and Ca. Nesciobacter abundans

Elizabeth Sinclair, Noah Gettle, Eva Stříbrná, Aleš Horák, Graeme Oatley, Drahomíra Faktorová, Julius Lukeš, Michael Paulini, Richard L. O’Brien, EBI Aquatic Symbiosis Genomics Data Portal Team, Aquatic Symbiosis Genomics Project Leadership, Eerik Aunin, Victoria McKenna, Daria Tashyreva, Haoyu Niu, John M. Archibald, Camilla Santos
article en

Abstract

We present a genome assembly of the diplonemid Diplonema japonicum YPF1604 (Discoba; Euglenozoa; Diplonemea; Diplonemidae). The genome sequence is 62.30 megabases in span. Most of the assembly is scaffolded into 118 chromosomal pseudomolecules. The multipartite mitochondrial genome was also assembled. The genome sequences of two bacterial endosymbionts, Ca. Cytomitobacter primus and Ca. Cytomitobacter primus, were also assembled.

Wellcome Open ResearchVol. 10
Dalhousie University (CA), Wellcome Sanger Institute (GB), Institute of Parasitology of the Slovak Academy of Sciences (SK), Czech Academy of Sciences, Biology Centre (CZ)
Openalex Percentile: Top 18%
Protist diversity and phylogeny
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The genome sequences of the diplonemid protist Diplonema japonicum YPF1604 and its bacterial endosymbionts Ca. Cytomitobacter primus and Ca. Nesciobacter abundans — Elizabeth Sinclair, Noah Gettle, et al. · Wellcome Open Research (2026) | TGRS Research Map | TGRS