Single‐Cell RNA Sequencing‐Based Identification of Novel Podocyte Injury‐Associated Genes From Isolated Glomeruli of Diabetic db/db Mice

ABSTRACT Podocyte injury is a primary driver of progression in diabetic kidney disease (DKD). Although single‐cell RNA sequencing (scRNA‐seq) is a powerful tool for identifying novel disease‐associated genes, podocytes are frequently underrepresented in whole‐kidney scRNA‐seq datasets because they constitute only a minor fraction of renal cells. To overcome this limitation, we performed scRNA‐seq on magnetically isolated glomeruli from diabetic db/db mice, generating a high‐resolution, glomerulus‐focused transcriptomic dataset. Diabetic glomeruli exhibited a marked reduction in podocyte abundance and extensive transcriptional remodeling. By integrating in vivo scRNA‐seq data with in vitro analyses of cultured human podocytes exposed to diabetic stimuli—specifically palmitate‐induced lipotoxicity—we identified four candidate genes ( OPCML , ADM , NELL2 , and DHRS3 ) associated with diabetic podocyte injury. Among these candidates, in vitro mechanistic validation demonstrated that knockdown of OPCML or ADM , as well as overexpression of DHRS3 , significantly attenuated palmitate‐induced apoptosis and preserved actin cytoskeletal integrity. These findings identify OPCML , ADM , and DHRS3 as novel mediators of podocyte injury and promising therapeutic targets for DKD.

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Publication Details

Journal
The FASEB Journal
Published
2026-09-19
DOI
https://doi.org/10.1096/fj.202603735r
Primary Topic
Single-cell and spatial transcriptomics
Type
article
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article

Single‐Cell RNA Sequencing‐Based Identification of Novel Podocyte Injury‐Associated Genes From Isolated Glomeruli of Diabetic db/db Mice

Sho Sugahara, Shogo Kuwagata, Shinji Kume, Kosuke Yamahara et al.
The FASEB Journal
Single-cell and spatial transcriptomics
article

Single‐Cell RNA Sequencing‐Based Identification of Novel Podocyte Injury‐Associated Genes From Isolated Glomeruli of Diabetic db/db Mice

Sho Sugahara, Shogo Kuwagata, Shinji Kume, Kosuke Yamahara, Miho Yoshioka, Masami Chin‐Kanasaki, Mako Yasuda‐Yamahara, Yuki Tanaka‐Sasaki, Hiroaki Tsuruta
article en

Abstract

ABSTRACT Podocyte injury is a primary driver of progression in diabetic kidney disease (DKD). Although single‐cell RNA sequencing (scRNA‐seq) is a powerful tool for identifying novel disease‐associated genes, podocytes are frequently underrepresented in whole‐kidney scRNA‐seq datasets because they constitute only a minor fraction of renal cells. To overcome this limitation, we performed scRNA‐seq on magnetically isolated glomeruli from diabetic db/db mice, generating a high‐resolution, glomerulus‐focused transcriptomic dataset. Diabetic glomeruli exhibited a marked reduction in podocyte abundance and extensive transcriptional remodeling. By integrating in vivo scRNA‐seq data with in vitro analyses of cultured human podocytes exposed to diabetic stimuli—specifically palmitate‐induced lipotoxicity—we identified four candidate genes ( OPCML , ADM , NELL2 , and DHRS3 ) associated with diabetic podocyte injury. Among these candidates, in vitro mechanistic validation demonstrated that knockdown of OPCML or ADM , as well as overexpression of DHRS3 , significantly attenuated palmitate‐induced apoptosis and preserved actin cytoskeletal integrity. These findings identify OPCML , ADM , and DHRS3 as novel mediators of podocyte injury and promising therapeutic targets for DKD.

The FASEB JournalVol. 40(18)
Shiga University of Medical Science (JP), National Center for Global Health and Medicine (JP)
Good health and well-being
Openalex Percentile: Top 18%
Single-cell and spatial transcriptomics
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Single‐Cell RNA Sequencing‐Based Identification of Novel Podocyte Injury‐Associated Genes From Isolated Glomeruli of Diabetic db/db Mice — Sho Sugahara, Shogo Kuwagata, et al. · The FASEB Journal (2026) | TGRS Research Map | TGRS