Dietary and nutritional strategies for reducing disease risk associated with antibiotic-induced dysbiosis

Antibiotic exposure is a major driver of gut microbiota dysbiosis, and its effects extend beyond transient diversity loss. Persistent alterations in microbial composition and metabolites disrupt intestinal barrier integrity, immune homeostasis, and host metabolic signaling, thereby increasing the risk of chronic diseases. Here, we review the evidence linking antibiotic-induced dysbiosis to disease susceptibility and argue that post-antibiotic recovery should target microbial functions and metabolic network restoration. We also examine a range of nutritional strategies, including dietary adjustments, prebiotics, probiotics, and bioactive nutrients, for their capacity to support beneficial commensal bacteria, restore key microbial metabolites, and enhance the gut ecosystem resilience. However, inter-individual variability in response complicates the development of universal protocols, and limited long-term clinical outcome data make it difficult to determine the clinical value of these interventions. Integrating nutritional science, microbial ecology, and precision medicine will be essential for developing effective personalized interventions.

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Publication Details

Journal
Gut Microbes
Published
2026-09-17
DOI
https://doi.org/10.1080/19490976.2026.2728330
Primary Topic
Gut microbiota and health
Type
article
Field-Weighted Citation Impact
0.00

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article

Dietary and nutritional strategies for reducing disease risk associated with antibiotic-induced dysbiosis

Xiaomei Lyu, Qixiao Zhai, Fengwei Tian, Peijun Tian et al.
Gut Microbes
Gut microbiota and health
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Dietary and nutritional strategies for reducing disease risk associated with antibiotic-induced dysbiosis

Xiaomei Lyu, Qixiao Zhai, Fengwei Tian, Peijun Tian, Wenwei Lu, Gang Wang, Chengcheng Zhang, Shumao Cui, Bo Yang, Yijin Yang, Jianxin Zhao, Ruimin Wang, Hang Guo
article en

Abstract

Antibiotic exposure is a major driver of gut microbiota dysbiosis, and its effects extend beyond transient diversity loss. Persistent alterations in microbial composition and metabolites disrupt intestinal barrier integrity, immune homeostasis, and host metabolic signaling, thereby increasing the risk of chronic diseases. Here, we review the evidence linking antibiotic-induced dysbiosis to disease susceptibility and argue that post-antibiotic recovery should target microbial functions and metabolic network restoration. We also examine a range of nutritional strategies, including dietary adjustments, prebiotics, probiotics, and bioactive nutrients, for their capacity to support beneficial commensal bacteria, restore key microbial metabolites, and enhance the gut ecosystem resilience. However, inter-individual variability in response complicates the development of universal protocols, and limited long-term clinical outcome data make it difficult to determine the clinical value of these interventions. Integrating nutritional science, microbial ecology, and precision medicine will be essential for developing effective personalized interventions.

Gut MicrobesVol. 18(1)
Jiangnan University (CN), University of Shanghai for Science and Technology (CN), Hainan University (CN), State Key Laboratory of Food Science and Technology (CN)
National Natural Science Foundation of China
Zero hunger
Openalex Percentile: Top 18%
Gut microbiota and health
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