From AI Agents to Flexible Automated Research Pipelines

AI agents can connect activities that are usually distributed across research software, development tools and laboratory instruments. Drawing on my experience with hardware and software development, remote computing and instrument integration, I describe a practical route towards end-to-end research automation. The central requirement is a working connection between readable documentation, executable tools and observable results. With suitable robotic capabilities, this connection could extend to physical operations and allow laboratories to reconfigure workflows around changing research goals. Codex is used as one practical example of a general class of AI agents. This perspective outlines the implementation conditions, feedback loop and implications for engineering, while distinguishing personal experience from proposed extensions to robotic research pipelines.

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-09-17
DOI
https://doi.org/10.5281/zenodo.22811932
Primary Topic
Scientific Computing and Data Management
Type
preprint
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preprint

From AI Agents to Flexible Automated Research Pipelines

Dekun Yang
Zenodo (CERN European Organization for Nuclear Research)
Scientific Computing and Data Management
preprint

From AI Agents to Flexible Automated Research Pipelines

Dekun Yang
preprint en

Abstract

AI agents can connect activities that are usually distributed across research software, development tools and laboratory instruments. Drawing on my experience with hardware and software development, remote computing and instrument integration, I describe a practical route towards end-to-end research automation. The central requirement is a working connection between readable documentation, executable tools and observable results. With suitable robotic capabilities, this connection could extend to physical operations and allow laboratories to reconfigure workflows around changing research goals. Codex is used as one practical example of a general class of AI agents. This perspective outlines the implementation conditions, feedback loop and implications for engineering, while distinguishing personal experience from proposed extensions to robotic research pipelines.

Zenodo (CERN European Organization for Nuclear Research)
Zhejiang University (CN)
Industry, innovation and infrastructure
Scientific Computing and Data Management
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From AI Agents to Flexible Automated Research Pipelines — Dekun Yang · Zenodo (CERN European Organization for Nuclear Research) (2026) | TGRS Research Map | TGRS