Prospective Evaluation of Multimodal Parkinson's Disease Risk: A Proposed Observational Protocol for NeuralCipher

Abstract Digital measurements may contribute to Parkinson's disease risk research, but a prospective evaluation must distinguish prediction of future clinical diagnosis from recognition of already established disease. This article proposes an observational protocol for evaluating a frozen multimodal NeuralCipher research model among adults without Parkinson's disease at baseline. It is an unregistered design proposal; no participants have been recruited and no results are reported. The intended design would recruit consecutive eligible adults from participating referral services, obtain a short baseline period of smartphone and wearable measurements, and follow clinical outcomes for 36 months. Recruitment sites, investigators, resources, and ethics arrangements remain to be established. Independent clinicians, blinded to model outputs, would adjudicate baseline eligibility and subsequent diagnoses. The primary outcome would be adjudicated Parkinson's disease diagnosis within 36 months after the prediction landmark, with death treated as a competing event and incomplete follow-up handled explicitly. Evaluation would address probability accuracy, calibration, discrimination, coverage, and incremental value relative to a frozen clinical comparator. A hypothetical planning calculation demonstrates how event frequency and loss to follow-up affect the required recruitment scale; it does not establish a final sample size. The protocol also proposes acquisition safety rules, separate consent choices, controlled data access, missingness analyses, and publication of negative findings. Its purpose is to make an independent validation study concrete enough for methodological and clinical criticism while preserving a clear boundary between a research plan and evidence of clinical usefulness. Article details Authors: NeuralCipherai; Kadir Tamrak; Salih Yaldız; Feride Yaldız; Ömer Ağyol; Yavuz Selim Silay; Hasan Randa Publisher: neluracipher.ai DOI: 10.5281/zenodo.22779041 Version: 1.0Language: English Project website: https://neuralcipher.ai References Bossuyt, P. M., Reitsma, J. B., Bruns, D. E., Gatsonis, C. A., Glasziou, P. P., Irwig, L., Lijmer, J. G., Moher, D., Rennie, D., de Vet, H. C. W., Kressel, H. Y., Rifai, N., Golub, R. M., Altman, D. G., Hooft, L., Korevaar, D. A., Cohen, J. F., & for the STARD Group. (2015). STARD 2015: An updated list of essential items for reporting diagnostic accuracy studies. BMJ, 351, Article h5527. https://doi.org/10.1136/bmj.h5527 Bot, B. M., Suver, C., Neto, E. C., Kellen, M., Klein, A., Bare, C., Doerr, M., Pratap, A., Wilbanks, J., Dorsey, E. R., Friend, S. H., & Trister, A. D. (2016). The mPower study, Parkinson disease mobile data collected using ResearchKit. Scientific Data, 3(1), Article 160011. https://doi.org/10.1038/sdata.2016.11 Collins, G. S., Moons, K. G. M., Dhiman, P., Riley, R. D., Beam, A. L., Van Calster, B., Ghassemi, M., Liu, X., Reitsma, J. B., van Smeden, M., Boulesteix, A.-L., Camaradou, J. C., Celi, L. A., Denaxas, S., Denniston, A. K., Glocker, B., Golub, R. M., Harvey, H., Heinze, G., . . . Logullo, P. (2024). TRIPOD+AI statement: Updated guidance for reporting clinical prediction models that use regression or machine learning methods. BMJ, 385, Article e078378. https://doi.org/10.1136/bmj-2023-078378 Gerds, T. A., & Schumacher, M. (2006). Consistent estimation of the expected Brier score in general survival models with right-censored event times. Biometrical Journal, 48(6), 1029–1040. https://doi.org/10.1002/bimj.200610301 Goetz, C. G., Tilley, B. C., Shaftman, S. R., Stebbins, G. T., Fahn, S., Martinez‐Martin, P., Poewe, W., Sampaio, C., Stern, M. B., Dodel, R., Dubois, B., Holloway, R., Jankovic, J., Kulisevsky, J., Lang, A. E., Lees, A., Leurgans, S., LeWitt, P. A., Nyenhuis, D., . . . LaPelle, N. (2008). Movement Disorder Society‐sponsored revision of the Unified Parkinson's Disease Rating Scale (MDS‐UPDRS): Scale presentation and clinimetric testing results. Movement Disorders, 23(15), 2129–2170. https://doi.org/10.1002/mds.22340 Heinzel, S., Berg, D., Gasser, T., Chen, H., Yao, C., Postuma, R. B., & the MDS Task Force on the Definition of Parkinson's Disease. (2019). Update of the MDS research criteria for prodromal Parkinson's disease. Movement Disorders, 34(10), 1464–1470. https://doi.org/10.1002/mds.27802 Lee, K. J., Tilling, K. M., Cornish, R. P., Little, R. J. A., Bell, M. L., Goetghebeur, E., Hogan, J. W., & Carpenter, J. R. (2021). Framework for the treatment and reporting of missing data in observational studies: The Treatment And Reporting of Missing data in Observational Studies framework. Journal of Clinical Epidemiology, 134, 79–88. https://doi.org/10.1016/j.jclinepi.2021.01.008 Marek, K., Chowdhury, S., Siderowf, A., Lasch, S., Coffey, C. S., Caspell‐Garcia, C., Simuni, T., Jennings, D., Tanner, C. M., Trojanowski, J. Q., Shaw, L. M., Seibyl, J., Schuff, N., Singleton, A., Kieburtz, K., Toga, A. W., Mollenhauer, B., Galasko, D., Chahine, L. M., . . . the Parkinson's Progression Markers Initiative. (2018). The Parkinson's progression markers initiative (PPMI) – establishing a PD biomarker cohort. Annals of Clinical and Translational Neurology, 5(12), 1460–1477. https://doi.org/10.1002/acn3.644 Moons, K. G. M., Damen, J. A. A., Kaul, T., Hooft, L., Andaur Navarro, C., Dhiman, P., Beam, A. L., Van Calster, B., Celi, L. A., Denaxas, S., Denniston, A. K., Ghassemi, M., Heinze, G., Kengne, A. P., Maier-Hein, L., Liu, X., Logullo, P., McCradden, M. D., Liu, N., . . . van Smeden, M. (2025). PROBAST+AI: An updated quality, risk of bias, and applicability assessment tool for prediction models using regression or artificial intelligence methods. BMJ, 388, Article e082505. https://doi.org/10.1136/bmj-2024-082505 Postuma, R. B., Berg, D., Stern, M., Poewe, W., Olanow, C. W., Oertel, W., Obeso, J., Marek, K., Litvan, I., Lang, A. E., Halliday, G., Goetz, C. G., Gasser, T., Dubois, B., Chan, P., Bloem, B. R., Adler, C. H., & Deuschl, G. (2015). MDS clinical diagnostic criteria for Parkinson's disease. Movement Disorders, 30(12), 1591–1601. https://doi.org/10.1002/mds.26424 Riley, R. D., Debray, T. P. A., Collins, G. S., Archer, L., Ensor, J., van Smeden, M., & Snell, K. I. E. (2021). Minimum sample size for external validation of a clinical prediction model with a binary outcome. Statistics in Medicine, 40(19), 4230–4251. https://doi.org/10.1002/sim.9025 Saeb, S., Lonini, L., Jayaraman, A., Mohr, D. C., & Kording, K. P. (2017). The need to approximate the use-case in clinical machine learning. GigaScience, 6(5), Article gix019. https://doi.org/10.1093/gigascience/gix019 Schalkamp, A.-K., Peall, K. J., Harrison, N. A., & Sandor, C. (2023). Wearable movement-tracking data identify Parkinson’s disease years before clinical diagnosis. Nature Medicine, 29(8), 2048–2056. https://doi.org/10.1038/s41591-023-02440-2 Siderowf, A., Concha-Marambio, L., Lafontant, D.-E., Farris, C. M., Ma, Y., Urenia, P. A., Nguyen, H., Alcalay, R. N., Chahine, L. M., Foroud, T., Galasko, D., Kieburtz, K., Merchant, K., Mollenhauer, B., Poston, K. L., Seibyl, J., Simuni, T., Tanner, C. M., Weintraub, D., . . . Soto, C. (2023). Assessment of heterogeneity among participants in the Parkinson's Progression Markers Initiative cohort using α-synuclein seed amplification: A cross-sectional study. The Lancet Neurology, 22(5), 407–417. https://doi.org/10.1016/s1474-4422(23)00109-6 Vasey, B., Nagendran, M., Campbell, B., Clifton, D. A., Collins, G. S., Denaxas, S., Denniston, A. K., Faes, L., Geerts, B., Ibrahim, M., Liu, X., Mateen, B. A., Mathur, P., McCradden, M. D., Morgan, L., Ordish, J., Rogers, C., Saria, S., Ting, D. S. W., . . . the DECIDE-AI expert group. (2022). Reporting guideline for the early-stage clinical evaluation of decision support systems driven by artificial intelligence: DECIDE-AI. Nature Medicine, 28(5), 924–933. https://doi.org/10.1038/s41591-022-01772-9 Vickers, A. J., & Elkin, E. B. (2006). Decision curve analysis: A novel method for evaluating prediction models. Medical Decision Making, 26(6), 565–574. https://doi.org/10.1177/0272989x06295361 von Elm, E., Altman, D. G., Egger, M., Pocock, S. J., Gøtzsche, P. C., Vandenbroucke, J. P., & for the STROBE Initiative. (2007). The Strengthening the Reporting of Observational Studies in Epidemiology (STROBE) statement: Guidelines for reporting observational studies. PLoS Medicine, 4(10), Article e296. https://doi.org/10.1371/journal.pmed.0040296 Yang, Y., Yuan, Y., Zhang, G., Wang, H., Chen, Y.-C., Liu, Y., Tarolli, C. G., Crepeau, D., Bukartyk, J., Junna, M. R., Videnovic, A., Ellis, T. D., Lipford, M. C., Dorsey, R., & Katabi, D. (2022). Artificial intelligence-enabled detection and assessment of Parkinson’s disease using nocturnal breathing signals. Nature Medicine, 28(10), 2207–2215. https://doi.org/10.1038/s41591-022-01932-x

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Zenodo (CERN European Organization for Nuclear Research)
Published
2026-09-16
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https://doi.org/10.5281/zenodo.22779040
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Parkinson's Disease Mechanisms and Treatments
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preprint

Prospective Evaluation of Multimodal Parkinson's Disease Risk: A Proposed Observational Protocol for NeuralCipher

Feride Yaldiz, Yavuz Selim Sılay, Kadir Tamrak, Salih Yaldız et al.
Zenodo (CERN European Organization for Nuclear Research)
Parkinson's Disease Mechanisms and Treatments
preprint

Prospective Evaluation of Multimodal Parkinson's Disease Risk: A Proposed Observational Protocol for NeuralCipher

Feride Yaldiz, Yavuz Selim Sılay, Kadir Tamrak, Salih Yaldız, NeuralCipherai, Hasan Randa, Ömer Ağyol
preprint en

Abstract

Abstract Digital measurements may contribute to Parkinson's disease risk research, but a prospective evaluation must distinguish prediction of future clinical diagnosis from recognition of already established disease. This article proposes an observational protocol for evaluating a frozen multimodal NeuralCipher research model among adults without Parkinson's disease at baseline. It is an unregistered design proposal; no participants have been recruited and no results are reported. The intended design would recruit consecutive eligible adults from participating referral services, obtain a short baseline period of smartphone and wearable measurements, and follow clinical outcomes for 36 months. Recruitment sites, investigators, resources, and ethics arrangements remain to be established. Independent clinicians, blinded to model outputs, would adjudicate baseline eligibility and subsequent diagnoses. The primary outcome would be adjudicated Parkinson's disease diagnosis within 36 months after the prediction landmark, with death treated as a competing event and incomplete follow-up handled explicitly. Evaluation would address probability accuracy, calibration, discrimination, coverage, and incremental value relative to a frozen clinical comparator. A hypothetical planning calculation demonstrates how event frequency and loss to follow-up affect the required recruitment scale; it does not establish a final sample size. The protocol also proposes acquisition safety rules, separate consent choices, controlled data access, missingness analyses, and publication of negative findings. Its purpose is to make an independent validation study concrete enough for methodological and clinical criticism while preserving a clear boundary between a research plan and evidence of clinical usefulness. Article details Authors: NeuralCipherai; Kadir Tamrak; Salih Yaldız; Feride Yaldız; Ömer Ağyol; Yavuz Selim Silay; Hasan Randa Publisher: neluracipher.ai DOI: 10.5281/zenodo.22779041 Version: 1.0Language: English Project website: https://neuralcipher.ai References Bossuyt, P. M., Reitsma, J. B., Bruns, D. E., Gatsonis, C. A., Glasziou, P. P., Irwig, L., Lijmer, J. G., Moher, D., Rennie, D., de Vet, H. C. W., Kressel, H. Y., Rifai, N., Golub, R. M., Altman, D. G., Hooft, L., Korevaar, D. A., Cohen, J. F., & for the STARD Group. (2015). STARD 2015: An updated list of essential items for reporting diagnostic accuracy studies. BMJ, 351, Article h5527. https://doi.org/10.1136/bmj.h5527 Bot, B. M., Suver, C., Neto, E. C., Kellen, M., Klein, A., Bare, C., Doerr, M., Pratap, A., Wilbanks, J., Dorsey, E. R., Friend, S. H., & Trister, A. D. (2016). The mPower study, Parkinson disease mobile data collected using ResearchKit. Scientific Data, 3(1), Article 160011. https://doi.org/10.1038/sdata.2016.11 Collins, G. S., Moons, K. G. M., Dhiman, P., Riley, R. D., Beam, A. L., Van Calster, B., Ghassemi, M., Liu, X., Reitsma, J. B., van Smeden, M., Boulesteix, A.-L., Camaradou, J. C., Celi, L. A., Denaxas, S., Denniston, A. K., Glocker, B., Golub, R. M., Harvey, H., Heinze, G., . . . Logullo, P. (2024). TRIPOD+AI statement: Updated guidance for reporting clinical prediction models that use regression or machine learning methods. BMJ, 385, Article e078378. https://doi.org/10.1136/bmj-2023-078378 Gerds, T. A., & Schumacher, M. (2006). Consistent estimation of the expected Brier score in general survival models with right-censored event times. Biometrical Journal, 48(6), 1029–1040. https://doi.org/10.1002/bimj.200610301 Goetz, C. G., Tilley, B. C., Shaftman, S. R., Stebbins, G. T., Fahn, S., Martinez‐Martin, P., Poewe, W., Sampaio, C., Stern, M. B., Dodel, R., Dubois, B., Holloway, R., Jankovic, J., Kulisevsky, J., Lang, A. E., Lees, A., Leurgans, S., LeWitt, P. A., Nyenhuis, D., . . . LaPelle, N. (2008). Movement Disorder Society‐sponsored revision of the Unified Parkinson's Disease Rating Scale (MDS‐UPDRS): Scale presentation and clinimetric testing results. Movement Disorders, 23(15), 2129–2170. https://doi.org/10.1002/mds.22340 Heinzel, S., Berg, D., Gasser, T., Chen, H., Yao, C., Postuma, R. B., & the MDS Task Force on the Definition of Parkinson's Disease. (2019). Update of the MDS research criteria for prodromal Parkinson's disease. Movement Disorders, 34(10), 1464–1470. https://doi.org/10.1002/mds.27802 Lee, K. J., Tilling, K. M., Cornish, R. P., Little, R. J. A., Bell, M. L., Goetghebeur, E., Hogan, J. W., & Carpenter, J. R. (2021). Framework for the treatment and reporting of missing data in observational studies: The Treatment And Reporting of Missing data in Observational Studies framework. Journal of Clinical Epidemiology, 134, 79–88. https://doi.org/10.1016/j.jclinepi.2021.01.008 Marek, K., Chowdhury, S., Siderowf, A., Lasch, S., Coffey, C. S., Caspell‐Garcia, C., Simuni, T., Jennings, D., Tanner, C. M., Trojanowski, J. Q., Shaw, L. M., Seibyl, J., Schuff, N., Singleton, A., Kieburtz, K., Toga, A. W., Mollenhauer, B., Galasko, D., Chahine, L. M., . . . the Parkinson's Progression Markers Initiative. (2018). The Parkinson's progression markers initiative (PPMI) – establishing a PD biomarker cohort. Annals of Clinical and Translational Neurology, 5(12), 1460–1477. https://doi.org/10.1002/acn3.644 Moons, K. G. M., Damen, J. A. A., Kaul, T., Hooft, L., Andaur Navarro, C., Dhiman, P., Beam, A. L., Van Calster, B., Celi, L. A., Denaxas, S., Denniston, A. K., Ghassemi, M., Heinze, G., Kengne, A. P., Maier-Hein, L., Liu, X., Logullo, P., McCradden, M. D., Liu, N., . . . van Smeden, M. (2025). PROBAST+AI: An updated quality, risk of bias, and applicability assessment tool for prediction models using regression or artificial intelligence methods. BMJ, 388, Article e082505. https://doi.org/10.1136/bmj-2024-082505 Postuma, R. B., Berg, D., Stern, M., Poewe, W., Olanow, C. W., Oertel, W., Obeso, J., Marek, K., Litvan, I., Lang, A. E., Halliday, G., Goetz, C. G., Gasser, T., Dubois, B., Chan, P., Bloem, B. R., Adler, C. H., & Deuschl, G. (2015). MDS clinical diagnostic criteria for Parkinson's disease. Movement Disorders, 30(12), 1591–1601. https://doi.org/10.1002/mds.26424 Riley, R. D., Debray, T. P. A., Collins, G. S., Archer, L., Ensor, J., van Smeden, M., & Snell, K. I. E. (2021). Minimum sample size for external validation of a clinical prediction model with a binary outcome. Statistics in Medicine, 40(19), 4230–4251. https://doi.org/10.1002/sim.9025 Saeb, S., Lonini, L., Jayaraman, A., Mohr, D. C., & Kording, K. P. (2017). The need to approximate the use-case in clinical machine learning. GigaScience, 6(5), Article gix019. https://doi.org/10.1093/gigascience/gix019 Schalkamp, A.-K., Peall, K. J., Harrison, N. A., & Sandor, C. (2023). Wearable movement-tracking data identify Parkinson’s disease years before clinical diagnosis. Nature Medicine, 29(8), 2048–2056. https://doi.org/10.1038/s41591-023-02440-2 Siderowf, A., Concha-Marambio, L., Lafontant, D.-E., Farris, C. M., Ma, Y., Urenia, P. A., Nguyen, H., Alcalay, R. N., Chahine, L. M., Foroud, T., Galasko, D., Kieburtz, K., Merchant, K., Mollenhauer, B., Poston, K. L., Seibyl, J., Simuni, T., Tanner, C. M., Weintraub, D., . . . Soto, C. (2023). Assessment of heterogeneity among participants in the Parkinson's Progression Markers Initiative cohort using α-synuclein seed amplification: A cross-sectional study. The Lancet Neurology, 22(5), 407–417. https://doi.org/10.1016/s1474-4422(23)00109-6 Vasey, B., Nagendran, M., Campbell, B., Clifton, D. A., Collins, G. S., Denaxas, S., Denniston, A. K., Faes, L., Geerts, B., Ibrahim, M., Liu, X., Mateen, B. A., Mathur, P., McCradden, M. D., Morgan, L., Ordish, J., Rogers, C., Saria, S., Ting, D. S. W., . . . the DECIDE-AI expert group. (2022). Reporting guideline for the early-stage clinical evaluation of decision support systems driven by artificial intelligence: DECIDE-AI. Nature Medicine, 28(5), 924–933. https://doi.org/10.1038/s41591-022-01772-9 Vickers, A. J., & Elkin, E. B. (2006). Decision curve analysis: A novel method for evaluating prediction models. Medical Decision Making, 26(6), 565–574. https://doi.org/10.1177/0272989x06295361 von Elm, E., Altman, D. G., Egger, M., Pocock, S. J., Gøtzsche, P. C., Vandenbroucke, J. P., & for the STROBE Initiative. (2007). The Strengthening the Reporting of Observational Studies in Epidemiology (STROBE) statement: Guidelines for reporting observational studies. PLoS Medicine, 4(10), Article e296. https://doi.org/10.1371/journal.pmed.0040296 Yang, Y., Yuan, Y., Zhang, G., Wang, H., Chen, Y.-C., Liu, Y., Tarolli, C. G., Crepeau, D., Bukartyk, J., Junna, M. R., Videnovic, A., Ellis, T. D., Lipford, M. C., Dorsey, R., & Katabi, D. (2022). Artificial intelligence-enabled detection and assessment of Parkinson’s disease using nocturnal breathing signals. Nature Medicine, 28(10), 2207–2215. https://doi.org/10.1038/s41591-022-01932-x

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