Fixed-configuration inversion of interaction potentials from equilibrium configurations at fixed state points

Recovering interaction potentials from structural information is a fundamental inverse problem in statistical physics and soft-matter research. We investigate a force-sampling implementation of fixed-configuration inversion for particle-resolved equilibrium configurations. A distance-histogram estimate from 10 000 configurations provides a fixed, potential-independent target, whereas forces recalculated from the current trial potential on fixed coordinate subsets generate smooth, potential-dependent responses. Disjoint training and validation subsets of 200 configurations each enable validation-controlled checkpoint selection and termination without generating new equilibrium trajectories. We test the method for a three-dimensional Lennard-Jones system at reduced inverse temperature β*=ε/kBT=1.0 and reduced number densities ρ*=ρσ3 of 0.01, 0.70, 0.75, 0.80, 0.85, and 0.90, where ρ is the number density and ε and σ are the energy and length scales. Over the reliable radial interval, the inversion recovers the principal features of the reference potential and reproduces the target structure within statistical resolution. A trajectory block bootstrap that repeats the complete inversion quantifies uncertainty in the target radial distribution function, validation response, and recovered potential, identifying sparse low-density pair statistics and limited pair occupancy near the repulsive core as important sources. Independent forward molecular dynamics simulations at ρ*=0.80 and 0.90 confirm reproduction under renewed sampling. At ρ*=0.80, a matched comparison showed an ∼204-fold reduction in wall-clock cost relative to conventional iterative Boltzmann inversion under the present implementations and validation-controlled stopping protocol. These results establish force sampling as an efficient, statistically controlled response estimator for fixed-configuration pair-potential inversion.

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Publication Details

Journal
The Journal of Chemical Physics
Published
2026-09-15
DOI
https://doi.org/10.1063/5.0335608
Primary Topic
Protein Structure and Dynamics
Type
article
Field-Weighted Citation Impact
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article

Fixed-configuration inversion of interaction potentials from equilibrium configurations at fixed state points

Qiuju Chen, Jianxiang Tian, Yuan Liu, Xurui Li
The Journal of Chemical Physics
Protein Structure and Dynamics
article

Fixed-configuration inversion of interaction potentials from equilibrium configurations at fixed state points

Qiuju Chen, Jianxiang Tian, Yuan Liu, Xurui Li
article en

Abstract

Recovering interaction potentials from structural information is a fundamental inverse problem in statistical physics and soft-matter research. We investigate a force-sampling implementation of fixed-configuration inversion for particle-resolved equilibrium configurations. A distance-histogram estimate from 10 000 configurations provides a fixed, potential-independent target, whereas forces recalculated from the current trial potential on fixed coordinate subsets generate smooth, potential-dependent responses. Disjoint training and validation subsets of 200 configurations each enable validation-controlled checkpoint selection and termination without generating new equilibrium trajectories. We test the method for a three-dimensional Lennard-Jones system at reduced inverse temperature β*=ε/kBT=1.0 and reduced number densities ρ*=ρσ3 of 0.01, 0.70, 0.75, 0.80, 0.85, and 0.90, where ρ is the number density and ε and σ are the energy and length scales. Over the reliable radial interval, the inversion recovers the principal features of the reference potential and reproduces the target structure within statistical resolution. A trajectory block bootstrap that repeats the complete inversion quantifies uncertainty in the target radial distribution function, validation response, and recovered potential, identifying sparse low-density pair statistics and limited pair occupancy near the repulsive core as important sources. Independent forward molecular dynamics simulations at ρ*=0.80 and 0.90 confirm reproduction under renewed sampling. At ρ*=0.80, a matched comparison showed an ∼204-fold reduction in wall-clock cost relative to conventional iterative Boltzmann inversion under the present implementations and validation-controlled stopping protocol. These results establish force sampling as an efficient, statistically controlled response estimator for fixed-configuration pair-potential inversion.

The Journal of Chemical PhysicsVol. 165(11)
Qufu Normal University (CN), Beijing Normal University (CN), Dalian University of Technology (CN)
National Natural Science Foundation of China, Natural Science Foundation of Shandong Province
Openalex Percentile: Top 18%
Protein Structure and Dynamics
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