A continually evolving knowledge-guided deep learning framework for daily maize yield formation

CONTEXT As multi-source agricultural datasets expand, accurate and interpretable simulation of crop yield formation is increasingly feasible and important for food security. Process-based models are widely used for yield forecasting but require laborious regional calibration. Artificial intelligence models learn physiological patterns from large datasets but lack physiological consistency and generalize poorly under data-scarce conditions. OBJECTIVE We developed AgroEvoDeep-Yield, a knowledge-guided model that encodes mechanistic understanding through its neural architecture, enabling explicit and interpretable simulation of daily maize yield formation from flowering to maturity. We further established a framework that supports continual model evolution as new data become available. METHODS The model was pretrained on APSIM-simulated grain number and daily grain biomass sequences to impose physiological consistency. Following pretraining, the model evolved through two continual learning stages. First, field-level continual learning using 796 field observations reduced biases inherited from APSIM. The model was then adapted to regional-scale multi-source inputs using long-term records from 945 meteorological stations and expert-constrained cultivar-parameter optimization. RESULTS AND CONCLUSIONS After field-level continual learning, AgroEvoDeep-Yield reduced grain number and yield simulation errors by 29% and 24%, respectively, relative to APSIM, and outperformed conventional machine learning models in out-of-region prediction. Region-level continual learning reduced yield RMSE to 1.09 t/ha, and expert-constrained cultivar-parameter optimization further reduced it to 0.80 t/ha. SIGNIFICANCE This study demonstrates how a knowledge-guided model can be repeatedly adapted as new data become available, providing a practical framework for continual model evolution and a basis for future agricultural decision support.

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Publication Details

Journal
Agricultural Systems
Published
2026-09-14
DOI
https://doi.org/10.1016/j.agsy.2026.104981
Primary Topic
Climate change impacts on agriculture
Type
article
Field-Weighted Citation Impact
0.00

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article

A continually evolving knowledge-guided deep learning framework for daily maize yield formation

Tao Ye, Ke Liu, Kelin Hu, William D. Batchelor et al.
Agricultural Systems
Climate change impacts on agriculture
article

A continually evolving knowledge-guided deep learning framework for daily maize yield formation

Tao Ye, Ke Liu, Kelin Hu, William D. Batchelor, Fangzheng Chen, Puyu Feng, Junji Ou, Wenyao Yan, Matthew Tom Harrison, Yong Chen
article en

Abstract

CONTEXT As multi-source agricultural datasets expand, accurate and interpretable simulation of crop yield formation is increasingly feasible and important for food security. Process-based models are widely used for yield forecasting but require laborious regional calibration. Artificial intelligence models learn physiological patterns from large datasets but lack physiological consistency and generalize poorly under data-scarce conditions. OBJECTIVE We developed AgroEvoDeep-Yield, a knowledge-guided model that encodes mechanistic understanding through its neural architecture, enabling explicit and interpretable simulation of daily maize yield formation from flowering to maturity. We further established a framework that supports continual model evolution as new data become available. METHODS The model was pretrained on APSIM-simulated grain number and daily grain biomass sequences to impose physiological consistency. Following pretraining, the model evolved through two continual learning stages. First, field-level continual learning using 796 field observations reduced biases inherited from APSIM. The model was then adapted to regional-scale multi-source inputs using long-term records from 945 meteorological stations and expert-constrained cultivar-parameter optimization. RESULTS AND CONCLUSIONS After field-level continual learning, AgroEvoDeep-Yield reduced grain number and yield simulation errors by 29% and 24%, respectively, relative to APSIM, and outperformed conventional machine learning models in out-of-region prediction. Region-level continual learning reduced yield RMSE to 1.09 t/ha, and expert-constrained cultivar-parameter optimization further reduced it to 0.80 t/ha. SIGNIFICANCE This study demonstrates how a knowledge-guided model can be repeatedly adapted as new data become available, providing a practical framework for continual model evolution and a basis for future agricultural decision support.

Agricultural SystemsVol. 240
University of Tasmania (AU), Beijing Normal University (CN), China Agricultural University (CN), Auburn University (US)
National Natural Science Foundation of China, Chinese Universities Scientific Fund
Zero hunger
Openalex Percentile: Top 8%
Climate change impacts on agriculture
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