c.1681-7 G>A Variant in the Factor XII Gene in a Family Diagnosed with HAE-FXII Does Not Affect Splice Site

Introduction: Hereditary angioedema (HAE) is a rare, potentially life-threatening genetic condition characterized by recurrent episodes of localized tissue swelling, often affecting the skin, upper respiratory tract, and gastrointestinal system. HAE-FXII, also known as HAE with normal C1 inhibitor ( C1INH ), has been associated with mutations in only one of several genes, including FXII encoding coagulation factor XII (FXII). The aim of the study was to investigate the pathogenicity and functional consequences of the c.1681-7G>A intronic variant in the FXII gene according to ACMG guidelines in familial cases of HAE-FXII. Materials and Methods: Genetic analysis was performed using Sanger sequencing on affected individuals. To assess whether the variant affects splicing, in silico analysis and Messenger RNA (mRNA) studies were conducted on patient-derived samples. Results: The c.1681-7G>A variant was identified in multiple individuals from affected families. However, splicing analysis revealed that this intronic variant did not cause any alteration in mRNA processing. No aberrant transcripts were detected, and expression levels were comparable to controls, indicating that the variant does not have an effect on splicing or gene function. Discussion: The c.1681-7G>A variant in the FXII gene is unlikely to be a pathogenic alteration in HAE type III. Contribution to the Literature: These findings support its classification as a benign variant, emphasizing the importance of functional validation when interpreting intronic changes in genetic diagnostics.

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Publication Details

Journal
Pediatric Allergy Immunology and Pulmonology
Published
2026-09-11
DOI
https://doi.org/10.1177/2151321x261487958
Primary Topic
Coagulation, Bradykinin, Polyphosphates, and Angioedema
Type
article
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article

c.1681-7 G>A Variant in the Factor XII Gene in a Family Diagnosed with HAE-FXII Does Not Affect Splice Site

Yasin Karalı, Elif Uz, Merve Demirbağ Karaali, Şükrü Çekiç et al.
Pediatric Allergy Immunology and Pulmonology
Coagulation, Bradykinin, Polyphosphates, and Angioedema
article

c.1681-7 G>A Variant in the Factor XII Gene in a Family Diagnosed with HAE-FXII Does Not Affect Splice Site

Yasin Karalı, Elif Uz, Merve Demirbağ Karaali, Şükrü Çekiç, Zuhal Karalı, SIMPEL PANTIR RETZEP
article en

Abstract

Introduction: Hereditary angioedema (HAE) is a rare, potentially life-threatening genetic condition characterized by recurrent episodes of localized tissue swelling, often affecting the skin, upper respiratory tract, and gastrointestinal system. HAE-FXII, also known as HAE with normal C1 inhibitor ( C1INH ), has been associated with mutations in only one of several genes, including FXII encoding coagulation factor XII (FXII). The aim of the study was to investigate the pathogenicity and functional consequences of the c.1681-7G>A intronic variant in the FXII gene according to ACMG guidelines in familial cases of HAE-FXII. Materials and Methods: Genetic analysis was performed using Sanger sequencing on affected individuals. To assess whether the variant affects splicing, in silico analysis and Messenger RNA (mRNA) studies were conducted on patient-derived samples. Results: The c.1681-7G>A variant was identified in multiple individuals from affected families. However, splicing analysis revealed that this intronic variant did not cause any alteration in mRNA processing. No aberrant transcripts were detected, and expression levels were comparable to controls, indicating that the variant does not have an effect on splicing or gene function. Discussion: The c.1681-7G>A variant in the FXII gene is unlikely to be a pathogenic alteration in HAE type III. Contribution to the Literature: These findings support its classification as a benign variant, emphasizing the importance of functional validation when interpreting intronic changes in genetic diagnostics.

Pediatric Allergy Immunology and Pulmonology
Bursa Uludağ Üni̇versi̇tesi̇ (TR), Istanbul University (TR)
Openalex Percentile: Top 11%
Coagulation, Bradykinin, Polyphosphates, and Angioedema
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