Novel SLC6A9 variants in an adult presenting with GlyT1 encephalopathy

Only 14 individuals have been thus far described with GlyT1 encephalopathy due to biallelic variants in the SLC6A9 gene and the phenotypic picture is incomplete. Early mortality has been high, with only two known to survive into infancy. We report a 27-year-old individual who, to our knowledge, is the eldest person described with this ultra-rare disorder and who brings new phenotypic insights alongside potential prognosis for younger individuals. He is compound heterozygous for two novel SLC6A9 variants. He shares many unifying clinical features, including neonatal hypotonia with later hypertonicity, respiratory failure, exaggerated startle and arthrogryposis. Clinical course stabilised after early childhood. Perampanel was of significant benefit for the exaggerated startle. Significant visual loss is unexplained. It may relate to the essential role of GlyT1 in retinal amacrine cells, although this mechanism remains speculative.

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Publication Details

Journal
Journal of Human Genetics
Published
2026-09-11
DOI
https://doi.org/10.1038/s10038-026-01497-4
Primary Topic
Amino Acid Enzymes and Metabolism
Type
article
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article

Novel SLC6A9 variants in an adult presenting with GlyT1 encephalopathy

Meneka Kanagaratnam, Mark Mencias, Emma Matthews
Journal of Human Genetics
Amino Acid Enzymes and Metabolism
article

Novel SLC6A9 variants in an adult presenting with GlyT1 encephalopathy

Meneka Kanagaratnam, Mark Mencias, Emma Matthews
article en

Abstract

Only 14 individuals have been thus far described with GlyT1 encephalopathy due to biallelic variants in the SLC6A9 gene and the phenotypic picture is incomplete. Early mortality has been high, with only two known to survive into infancy. We report a 27-year-old individual who, to our knowledge, is the eldest person described with this ultra-rare disorder and who brings new phenotypic insights alongside potential prognosis for younger individuals. He is compound heterozygous for two novel SLC6A9 variants. He shares many unifying clinical features, including neonatal hypotonia with later hypertonicity, respiratory failure, exaggerated startle and arthrogryposis. Clinical course stabilised after early childhood. Perampanel was of significant benefit for the exaggerated startle. Significant visual loss is unexplained. It may relate to the essential role of GlyT1 in retinal amacrine cells, although this mechanism remains speculative.

Journal of Human Genetics
St George’s University Hospitals NHS Foundation Trust (GB)
Good health and well-being
Openalex Percentile: Top 16%
Amino Acid Enzymes and Metabolism
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Novel SLC6A9 variants in an adult presenting with GlyT1 encephalopathy — Meneka Kanagaratnam, Mark Mencias, et al. · Journal of Human Genetics (2026) | TGRS Research Map | TGRS