Insights Into Spatial Transcriptomics: Exploring Recent Technical Developments and Their Diverse Applications

Spatial transcriptomics (ST) integrates spatial information with gene expression data to quantify mRNA levels across diverse genes within the structural context of tissues and cells. This field enables simultaneous capture of cellular gene expression at the transcriptomic level while preserving spatial localization information. This approach enhances our understanding of cellular interactions and their immediate microenvironments. Utilizing this technique, researchers can gain deep insights into biological development and disease mechanisms across different tissue regions. Recently, ST has witnessed substantial advancements; however, it faces challenges such as reliance on specific sample types, the resolution of visualized genes, commercial feasibility, and the capability to collect comprehensive single-cell data. This article summarizes four primary ST techniques, comparing and analyzing diverse research methodologies to improve experimental design and analytical evaluation. It highlights the essential role of ST in integrated multi-omics analyses and the development of disease models while contemplating its future advancements.

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Publication Details

Journal
The FASEB Journal
Published
2026-09-11
DOI
https://doi.org/10.1096/fj.202502942rrr
Primary Topic
Single-cell and spatial transcriptomics
Type
article
Field-Weighted Citation Impact
0.00

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article

Insights Into Spatial Transcriptomics: Exploring Recent Technical Developments and Their Diverse Applications

Salwa E. Gomaa, Tieshan Teng, Huiru Cao, Zewei Yang et al.
The FASEB Journal
Single-cell and spatial transcriptomics
article

Insights Into Spatial Transcriptomics: Exploring Recent Technical Developments and Their Diverse Applications

Salwa E. Gomaa, Tieshan Teng, Huiru Cao, Zewei Yang, Xianghui Li, Jingjing Li, Xiaoqing Wang, Ke Xu, Jicheng Li, Yange Wang, Jiawen Shen, Ge Cheng, Xiaotao Dong
article en

Abstract

Spatial transcriptomics (ST) integrates spatial information with gene expression data to quantify mRNA levels across diverse genes within the structural context of tissues and cells. This field enables simultaneous capture of cellular gene expression at the transcriptomic level while preserving spatial localization information. This approach enhances our understanding of cellular interactions and their immediate microenvironments. Utilizing this technique, researchers can gain deep insights into biological development and disease mechanisms across different tissue regions. Recently, ST has witnessed substantial advancements; however, it faces challenges such as reliance on specific sample types, the resolution of visualized genes, commercial feasibility, and the capability to collect comprehensive single-cell data. This article summarizes four primary ST techniques, comparing and analyzing diverse research methodologies to improve experimental design and analytical evaluation. It highlights the essential role of ST in integrated multi-omics analyses and the development of disease models while contemplating its future advancements.

The FASEB JournalVol. 40(18)
Henan University (CN), Zagazig University (EG)
National Natural Science Foundation of China
Openalex Percentile: Top 18%
Single-cell and spatial transcriptomics
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Insights Into Spatial Transcriptomics: Exploring Recent Technical Developments and Their Diverse Applications — Salwa E. Gomaa, Tieshan Teng, et al. · The FASEB Journal (2026) | TGRS Research Map | TGRS