Sediment Metagenomic Analysis Report within the Campus

Apple snails (*Pomacea canaliculata*), an invasive species, can reshape benthic microbial communities through excretion. We performed shotgun metagenomic sequencing (~10 Gb per sample, DNBSEQ PE150) on nine sediment samples collected along a snail-influence gradient (near-snail, mid-distance, and snail-free groups) near Zhujiajiao Middle School; clean data ratios exceeded 98.5%, confirming reliable quality. Taxonomy was assigned using Kraken2/Bracken2, and MEGAHIT assembly plus CD-HIT clustering yielded 386,545 non-redundant genes from 728,729 predicted CDSs. Near-snail sediments showed higher assembly complexity and enriched organic-matter degraders (*Sorangium cellulosum*, *Anaeromyxobacter*), opportunistic pathogens (*Pseudomonas aeruginosa*, *Klebsiella pneumoniae*), and nitrogen-cycling taxa, while snail-free sediments were dominated by oligotrophic microbes. Alpha diversity did not differ significantly among groups, but NMDS revealed a gradient in community structure. Functional annotation highlighted enrichment of carbohydrate, energy, amino-acid, and xenobiotic-degradation pathways near snails. These results suggest apple snail invasion drives sediment microbial succession, with implications for eutrophication and pathogen-related health risks.

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Publication Details

Journal
China National GeneBank DataBase
Published
2026-09-11
DOI
https://doi.org/10.26036/cnp0010130
Primary Topic
Mollusks and Parasites Studies
Type
article
Field-Weighted Citation Impact
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article

Sediment Metagenomic Analysis Report within the Campus

杨洋(sunyy)
China National GeneBank DataBase
Mollusks and Parasites Studies
article

Sediment Metagenomic Analysis Report within the Campus

杨洋(sunyy)
article en

Abstract

Apple snails (*Pomacea canaliculata*), an invasive species, can reshape benthic microbial communities through excretion. We performed shotgun metagenomic sequencing (~10 Gb per sample, DNBSEQ PE150) on nine sediment samples collected along a snail-influence gradient (near-snail, mid-distance, and snail-free groups) near Zhujiajiao Middle School; clean data ratios exceeded 98.5%, confirming reliable quality. Taxonomy was assigned using Kraken2/Bracken2, and MEGAHIT assembly plus CD-HIT clustering yielded 386,545 non-redundant genes from 728,729 predicted CDSs. Near-snail sediments showed higher assembly complexity and enriched organic-matter degraders (*Sorangium cellulosum*, *Anaeromyxobacter*), opportunistic pathogens (*Pseudomonas aeruginosa*, *Klebsiella pneumoniae*), and nitrogen-cycling taxa, while snail-free sediments were dominated by oligotrophic microbes. Alpha diversity did not differ significantly among groups, but NMDS revealed a gradient in community structure. Functional annotation highlighted enrichment of carbohydrate, energy, amino-acid, and xenobiotic-degradation pathways near snails. These results suggest apple snail invasion drives sediment microbial succession, with implications for eutrophication and pathogen-related health risks.

China National GeneBank DataBase
Openalex Percentile: Top 11%
Mollusks and Parasites Studies
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