Torsionator: Dihedral Parameterization and Conformer Search Made Easy

Abstract Neural network potentials (NNPs), trained on quantum mechanical (QM) data, can deliver near QM-level accuracy while being much faster than QM calculations. In this work, we introduce a new software tool, Torsionator, which currently supports MACE, OBIWAN, and UMA NNPs for energy minimization of small molecules. Torsionator can analyze a set of selected conformers to parameterize the dihedral angles. These dihedral parameters can then be used for molecular mechanics calculations and simulations. We showcase Torsionator by performing dihedral scanning and parameterization of two representative antiviral compounds: favipiravir defluoro analog T1105 and emivirine. To thoroughly evaluate its robustness and general applicability, we benchmarked Torsionator using MACE on the TorsionNet500 dataset, comprising 500 chemically diverse small molecules with reference QM torsional profiles. These results indicate Torsionator as a practical, efficient, and scalable software tool for dihedral parameterization, enabling its routine integration into molecular simulation workflows.

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Publication Details

Journal
Journal of Chemical Theory and Computation
Published
2026-09-09
DOI
https://doi.org/10.1021/acs.jctc.6c01006
Primary Topic
Machine Learning in Materials Science
Type
article
Field-Weighted Citation Impact
0.00
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Torsionator: Dihedral Parameterization and Conformer Search Made Easy

Pietro Vidossich, Sergio Decherchi, Alice Triveri, Marco De Vivo et al.
Journal of Chemical Theory and Computation
Machine Learning in Materials Science
article

Torsionator: Dihedral Parameterization and Conformer Search Made Easy

Pietro Vidossich, Sergio Decherchi, Alice Triveri, Marco De Vivo, Giorgia Brosio
article en

Abstract

Abstract Neural network potentials (NNPs), trained on quantum mechanical (QM) data, can deliver near QM-level accuracy while being much faster than QM calculations. In this work, we introduce a new software tool, Torsionator, which currently supports MACE, OBIWAN, and UMA NNPs for energy minimization of small molecules. Torsionator can analyze a set of selected conformers to parameterize the dihedral angles. These dihedral parameters can then be used for molecular mechanics calculations and simulations. We showcase Torsionator by performing dihedral scanning and parameterization of two representative antiviral compounds: favipiravir defluoro analog T1105 and emivirine. To thoroughly evaluate its robustness and general applicability, we benchmarked Torsionator using MACE on the TorsionNet500 dataset, comprising 500 chemically diverse small molecules with reference QM torsional profiles. These results indicate Torsionator as a practical, efficient, and scalable software tool for dihedral parameterization, enabling its routine integration into molecular simulation workflows.

Journal of Chemical Theory and Computation
Italian Institute of Technology (IT)
Affordable and clean energy
Openalex Percentile: Top 24%
Machine Learning in Materials Science
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Torsionator: Dihedral Parameterization and Conformer Search Made Easy — Pietro Vidossich, Sergio Decherchi, et al. · Journal of Chemical Theory and Computation (2026) | TGRS Research Map | TGRS