The skin-specific long non-coding RNA TEDAR orchestrates late epidermal differentiation via an ERK-KLF4 cytoplasmic regulatory axis

Abstract The formation of a functional skin barrier depends on terminal keratinocyte differentiation, yet the contribution of long non-coding RNAs to this process remains incompletely understood. Here, using transcriptome analysis of more than 15,000 RNA-seq samples across 54 human tissues, we identify TEDAR (Terminal Epidermal Differentiation-Associated RNA), a highly skin-enriched lncRNA. Single-molecule RNA in situ hybridization revealed that TEDAR is confined to the uppermost granular layer of the epidermis, representing an exceptionally spatially restricted expression pattern. Functional studies demonstrated that CRISPR-mediated activation of TEDAR promotes keratinocyte differentiation even in the absence of external cues, while its depletion impaired late epidermal differentiation. In three-dimensional skin equivalents, TEDAR depletion severely compromises stratum corneum formation, highlighting its importance for proper epidermal barrier assembly. Mechanistically, TEDAR associates with ERK1/2-containing complexes and restrains ERK phosphorylation, thereby facilitating the nuclear accumulation of KLF4, a key regulator of epidermal differentiation. KLF4 depletion attenuated TEDAR-induced expression of several late differentiation genes, supporting a functional TEDAR–ERK–KLF4 axis. Clinically, TEDAR expression was reduced in cutaneous squamous cell carcinoma (cSCC) and chronic inflammatory skin diseases, including psoriasis and atopic dermatitis. Moreover, IL-22 suppressed TEDAR via STAT3 signalling in epidermal models. These findings identify TEDAR as an important regulator of terminal epidermal differentiation and suggest that its suppression may contribute to disturbed differentiation in inflammatory and neoplastic skin diseases.

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Journal
Cell Death and Disease
Published
2026-09-05
DOI
https://doi.org/10.1038/s41419-026-09192-0
Primary Topic
Cancer-related molecular mechanisms research
Type
article
Field-Weighted Citation Impact
0.00

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article

The skin-specific long non-coding RNA TEDAR orchestrates late epidermal differentiation via an ERK-KLF4 cytoplasmic regulatory axis

Özge Arslan, Kunal Das Mahapatra, E. Kelemen, Andor Pivarcsi et al.
Cell Death and Disease
Cancer-related molecular mechanisms research
article

The skin-specific long non-coding RNA TEDAR orchestrates late epidermal differentiation via an ERK-KLF4 cytoplasmic regulatory axis

Özge Arslan, Kunal Das Mahapatra, E. Kelemen, Andor Pivarcsi, Sreeram Peringattu Kalarikkal, Markus Kretz, Enikö Sonkoly, Christian Ziegler, Rachael Sugars, Longlong Luo, Nicole Hemmer, Johannes Graf, Lorenzo Pasquali
article en

Abstract

Abstract The formation of a functional skin barrier depends on terminal keratinocyte differentiation, yet the contribution of long non-coding RNAs to this process remains incompletely understood. Here, using transcriptome analysis of more than 15,000 RNA-seq samples across 54 human tissues, we identify TEDAR (Terminal Epidermal Differentiation-Associated RNA), a highly skin-enriched lncRNA. Single-molecule RNA in situ hybridization revealed that TEDAR is confined to the uppermost granular layer of the epidermis, representing an exceptionally spatially restricted expression pattern. Functional studies demonstrated that CRISPR-mediated activation of TEDAR promotes keratinocyte differentiation even in the absence of external cues, while its depletion impaired late epidermal differentiation. In three-dimensional skin equivalents, TEDAR depletion severely compromises stratum corneum formation, highlighting its importance for proper epidermal barrier assembly. Mechanistically, TEDAR associates with ERK1/2-containing complexes and restrains ERK phosphorylation, thereby facilitating the nuclear accumulation of KLF4, a key regulator of epidermal differentiation. KLF4 depletion attenuated TEDAR-induced expression of several late differentiation genes, supporting a functional TEDAR–ERK–KLF4 axis. Clinically, TEDAR expression was reduced in cutaneous squamous cell carcinoma (cSCC) and chronic inflammatory skin diseases, including psoriasis and atopic dermatitis. Moreover, IL-22 suppressed TEDAR via STAT3 signalling in epidermal models. These findings identify TEDAR as an important regulator of terminal epidermal differentiation and suggest that its suppression may contribute to disturbed differentiation in inflammatory and neoplastic skin diseases.

Cell Death and Disease
Uppsala University (SE), Karolinska Institutet (SE), MSH Medical School Hamburg – University of Applied Sciences and Medical University (DE), University of Regensburg (DE), University of Tübingen (DE)
National Psoriasis Foundation, Cancerfonden, Karolinska Institutet, Knut och Alice Wallenbergs Stiftelse, Stockholms Läns Landsting, Vetenskapsrådet, China Scholarship Council, LEO Pharma Research Foundation, LEO Fondet, Region Uppsala, HudFonden, National Institutes of Health, National Heart, Lung, and Blood Institute, National Institute of Mental Health, National Institute on Drug Abuse, National Human Genome Research Institute, NIH Office of the Director, National Cancer Institute, National Institute of Neurological Disorders and Stroke, Common Fund
Openalex Percentile: Top 14%
Cancer-related molecular mechanisms research
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