Single-cell spatial mapping reveals reproducible cell type organization and spatially-dependent gene expression in gastruloids

This repository includes all the processed data, processing scripts to generate the processed data, annotations, and notebooks used to generate the plots found in "Single-cell spatial mapping reveals reproducible cell type organization and spatially-dependent gene expression in gastruloids". Raw seqFISH data used to generate the cell by gene tables in this repository can be found in the BioImage Archive (accession number S-BIAD3844).