Bayesian meta-analysis with dependent effect sizes in R: A tutorial on the bayesRVE package

Meta-analytic data in psychology typically contain several effect sizes per study, arising from multiple measures, informants, time points or treatment contrasts, and effect sizes from the same study are statistically dependent. Two approaches to this problem have developed largely separately. Robust variance estimation with small-sample corrections provides standard errors that remain valid when the assumed dependence structure is wrong, but offers no Bayesian machinery; Bayesian multilevel modeling provides shrinkage estimation and full posterior distributions, but its interval estimates are only as trustworthy as the assumed within-study covariance structure. We describe the bayesRVE package for R, which combines the two approaches: the point estimate is the Bayesian posterior mean, the interval width is governed by a bias-reduced (CR2) cluster-robust sandwich estimate, and the interval tails use per-coefficient Satterthwaite degrees of freedom. The workflow consists of four functions, bm_fit(), sandwich(), ccc() and summary(), and is illustrated in a complete analysis of a publicly available psychology dataset comprising 113 correlations between school-motivation risk and later delinquency from 17 samples, including meta-regression with moderators, Markov chain Monte Carlo diagnostics, and the package's small-sample guardrails. We show that the calibrated interval does not depend on an assumed within-study correlation, describe cross-checks against the metafor and clubSandwich packages, and suggest what to report. All data and code are publicly available, and the analyses reproduce in about a minute on a standard laptop.

Authors

Institutions

Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-08-27
DOI
https://doi.org/10.5281/zenodo.22118900
Primary Topic
Meta-analysis and systematic reviews
Type
preprint
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
preprint

Bayesian meta-analysis with dependent effect sizes in R: A tutorial on the bayesRVE package

Joon-Ho Lee, Elizabeth Tipton
Zenodo (CERN European Organization for Nuclear Research)
Meta-analysis and systematic reviews
preprint

Bayesian meta-analysis with dependent effect sizes in R: A tutorial on the bayesRVE package

Joon-Ho Lee, Elizabeth Tipton
preprint en

Abstract

Meta-analytic data in psychology typically contain several effect sizes per study, arising from multiple measures, informants, time points or treatment contrasts, and effect sizes from the same study are statistically dependent. Two approaches to this problem have developed largely separately. Robust variance estimation with small-sample corrections provides standard errors that remain valid when the assumed dependence structure is wrong, but offers no Bayesian machinery; Bayesian multilevel modeling provides shrinkage estimation and full posterior distributions, but its interval estimates are only as trustworthy as the assumed within-study covariance structure. We describe the bayesRVE package for R, which combines the two approaches: the point estimate is the Bayesian posterior mean, the interval width is governed by a bias-reduced (CR2) cluster-robust sandwich estimate, and the interval tails use per-coefficient Satterthwaite degrees of freedom. The workflow consists of four functions, bm_fit(), sandwich(), ccc() and summary(), and is illustrated in a complete analysis of a publicly available psychology dataset comprising 113 correlations between school-motivation risk and later delinquency from 17 samples, including meta-regression with moderators, Markov chain Monte Carlo diagnostics, and the package's small-sample guardrails. We show that the calibrated interval does not depend on an assumed within-study correlation, describe cross-checks against the metafor and clubSandwich packages, and suggest what to report. All data and code are publicly available, and the analyses reproduce in about a minute on a standard laptop.

Zenodo (CERN European Organization for Nuclear Research)
University of Alabama (US)
Peace, Justice and strong institutions
Meta-analysis and systematic reviews
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.