Integrating single-cell transcriptomics and network pharmacology identifies ADORA1 as a candidate receptor for gastrodin derivatives in lung adenocarcinoma

BACKGROUND: Gastrodin, the main bioactive constituent of Gastrodia elata, shows antitumor activity, but its cell-type-specific mechanism in LUAD remains elusive. METHODS: Single-cell RNA-seq data (GSE131907; 208,506 cells, 58 samples, 44 patients) were analyzed with five frameworks: AUCell drug-sensitivity scoring, scTenifoldNet/scTenifoldKnk network/knockout analysis, decoupleR pathway inference, CellChat communication mapping, and MEBOCOST metabolic communication. Ten gastrodin derivatives were ranked by TOPSIS, docked against human ADORA1 (PDB: 5UEN), and validated by surface plasmon resonance (SPR) and an LPS-induced acute inflammation model in Kunming mice (CD68 immunohistochemistry, PARP Western blot, cytokine ELISA). RESULTS: ADORA1 was the only core target with both receptor and metabolic-sensor roles. TOPSIS ranked Gastrodin_T9 first (0.592), despite T8's highest network betweenness (0.1389). Docking gave modest affinities (-4.18 to -4.93 kcal/mol) with a shared 12-residue core; T9 covered most of the pocket (37/41). SPR supported the same order for three derivatives (T9 > T7 > T1; apparent K_D 22.79-68.18 μM, n = 3 runs), whereas native-gastrodin signal was too weak for reliable estimation. Lung conditioned medium showed Th1-skewed cytokines: IL-12 rose from 55.5 to 304.1 pg/mL under T9 (p < 0.001), IL-10 was unchanged, and the IL-12/IL-10 ratio shifted four-fold (p < 0.001). Derivatives raised the cleaved-PARP ratio modestly (1.05-1.15-fold), a preliminary change; CD68 staining was heaviest in the native-gastrodin group. CONCLUSIONS: These analyses nominate ADORA1 as a candidate receptor and Gastrodin_T9 as a lead among gastrodin derivatives in LUAD. The evidence is hypothesis-generating and biophysical; both candidates warrant mechanistic validation in LUAD-specific models.

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Journal
Biomedicine & Pharmacotherapy
Published
2026-08-27
DOI
https://doi.org/10.1016/j.biopha.2026.119870
Primary Topic
Biological and pharmacological studies of plants
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article
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article

Integrating single-cell transcriptomics and network pharmacology identifies ADORA1 as a candidate receptor for gastrodin derivatives in lung adenocarcinoma

Zaixiang Tang, Zan Li, Zhuang juan Zhang, Lei Ao et al.
Biomedicine & Pharmacotherapy
Biological and pharmacological studies of plants
article

Integrating single-cell transcriptomics and network pharmacology identifies ADORA1 as a candidate receptor for gastrodin derivatives in lung adenocarcinoma

Zaixiang Tang, Zan Li, Zhuang juan Zhang, Lei Ao, Ting you Zhang
article en

Abstract

BACKGROUND: Gastrodin, the main bioactive constituent of Gastrodia elata, shows antitumor activity, but its cell-type-specific mechanism in LUAD remains elusive. METHODS: Single-cell RNA-seq data (GSE131907; 208,506 cells, 58 samples, 44 patients) were analyzed with five frameworks: AUCell drug-sensitivity scoring, scTenifoldNet/scTenifoldKnk network/knockout analysis, decoupleR pathway inference, CellChat communication mapping, and MEBOCOST metabolic communication. Ten gastrodin derivatives were ranked by TOPSIS, docked against human ADORA1 (PDB: 5UEN), and validated by surface plasmon resonance (SPR) and an LPS-induced acute inflammation model in Kunming mice (CD68 immunohistochemistry, PARP Western blot, cytokine ELISA). RESULTS: ADORA1 was the only core target with both receptor and metabolic-sensor roles. TOPSIS ranked Gastrodin_T9 first (0.592), despite T8's highest network betweenness (0.1389). Docking gave modest affinities (-4.18 to -4.93 kcal/mol) with a shared 12-residue core; T9 covered most of the pocket (37/41). SPR supported the same order for three derivatives (T9 > T7 > T1; apparent K_D 22.79-68.18 μM, n = 3 runs), whereas native-gastrodin signal was too weak for reliable estimation. Lung conditioned medium showed Th1-skewed cytokines: IL-12 rose from 55.5 to 304.1 pg/mL under T9 (p < 0.001), IL-10 was unchanged, and the IL-12/IL-10 ratio shifted four-fold (p < 0.001). Derivatives raised the cleaved-PARP ratio modestly (1.05-1.15-fold), a preliminary change; CD68 staining was heaviest in the native-gastrodin group. CONCLUSIONS: These analyses nominate ADORA1 as a candidate receptor and Gastrodin_T9 as a lead among gastrodin derivatives in LUAD. The evidence is hypothesis-generating and biophysical; both candidates warrant mechanistic validation in LUAD-specific models.

Biomedicine & PharmacotherapyVol. 203
Sun Yat-sen University (CN), Zunyi Medical University (CN), Soochow University (CN), Hunan Cancer Hospital (CN)
Good health and well-being
Openalex Percentile: Top 12%
Biological and pharmacological studies of plants
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