Herbarium specimens in the age of artificial intelligence: from herbarium image identification to Integrative Taxonomic AI

Herbarium specimens are physical, verifiable records that form the basis of taxonomic knowledge and biodiversity research. Their large-scale digitization has produced extensive collections of high-resolution images and associated specimen metadata, creating conditions in which artificial intelligence (AI) can play an important role in plant taxonomy, collection management, and ecological research. Early AI applications have primarily focused on automated species identification based on individual specimen images. Although increasingly accurate, such approaches remain limited by their emphasis on single-specimen label prediction and by treating identification outputs as final analytical decisions. Recent methodological advances-including segmentation-based preprocessing, automated trait extraction, structured extraction of label data, detection of potentially misidentified specimens, and multimodal integration of visual, textual, and genetic information-extend AI applications beyond species identification toward broader analytical frameworks, encompassing taxonomic interpretation as well as ecological and biodiversity research. In these approaches, specimens are placed within a shared analytical space, and identification results are used to support comparisons across multiple specimens rather than being treated as final decisions for single individuals. This multi-specimen perspective enables quantitative examination of species boundaries, morphological variation, data inconsistencies, and taxonomic stability within curated collections. In this context, AI serves not as an ultimate decision-maker but as a decision-support tool embedded in expert-guided workflows and biodiversity knowledge infrastructures. These developments can be summarized as Integrative Taxonomic AI, an approach that employs learned morphospaces to interpret and refine taxonomic categories by integrating multimodal evidence and curated specimen data under expert guidance.

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Publication Details

Journal
Journal of Plant Research
Published
2026-08-26
DOI
https://doi.org/10.1007/s10265-026-01743-y
Primary Topic
Species Distribution and Climate Change
Type
article
Field-Weighted Citation Impact
0.00

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article

Herbarium specimens in the age of artificial intelligence: from herbarium image identification to Integrative Taxonomic AI

Takashi Akihiro, S H Han, Hyeonji Moon, Shuichiro Tagane et al.
Journal of Plant Research
Species Distribution and Climate Change
article

Herbarium specimens in the age of artificial intelligence: from herbarium image identification to Integrative Taxonomic AI

Takashi Akihiro, S H Han, Hyeonji Moon, Shuichiro Tagane, Atsuko Takano, Diego T. Vasques, Chung-Kun Lee, Amjad Khan, 박찬호, Jaesung Lee, Sangtae Kim, Jeongwoo Seo, Masato Shirai
article en

Abstract

Herbarium specimens are physical, verifiable records that form the basis of taxonomic knowledge and biodiversity research. Their large-scale digitization has produced extensive collections of high-resolution images and associated specimen metadata, creating conditions in which artificial intelligence (AI) can play an important role in plant taxonomy, collection management, and ecological research. Early AI applications have primarily focused on automated species identification based on individual specimen images. Although increasingly accurate, such approaches remain limited by their emphasis on single-specimen label prediction and by treating identification outputs as final analytical decisions. Recent methodological advances-including segmentation-based preprocessing, automated trait extraction, structured extraction of label data, detection of potentially misidentified specimens, and multimodal integration of visual, textual, and genetic information-extend AI applications beyond species identification toward broader analytical frameworks, encompassing taxonomic interpretation as well as ecological and biodiversity research. In these approaches, specimens are placed within a shared analytical space, and identification results are used to support comparisons across multiple specimens rather than being treated as final decisions for single individuals. This multi-specimen perspective enables quantitative examination of species boundaries, morphological variation, data inconsistencies, and taxonomic stability within curated collections. In this context, AI serves not as an ultimate decision-maker but as a decision-support tool embedded in expert-guided workflows and biodiversity knowledge infrastructures. These developments can be summarized as Integrative Taxonomic AI, an approach that employs learned morphospaces to interpret and refine taxonomic categories by integrating multimodal evidence and curated specimen data under expert guidance.

Journal of Plant Research
Kagoshima University (JP), Chonnam National University (KR), Sungshin Women's University (KR), Shimane University (JP), University of Hyogo (JP), Museum of Nature and Human Activities Hyogo (JP), Kobe University (JP), Chung-Ang University (KR), The University of Tokyo (JP)
National Research Foundation, Kangwon National University, National Research Foundation of Korea, Korea National Arboretum, Japan Society for the Promotion of Science
Industry, innovation and infrastructure
Openalex Percentile: Top 11%
Species Distribution and Climate Change
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