Double shrinkage transfer causal learning: An application to alzheimer’s disease

Amyloid-Beta 42 (ABeta42) is a key biomarker of cerebral amyloidosis in Alzheimer’s disease, and estimating its causal effect on subsequent cognitive outcomes is important for understanding disease progression in racial minority populations, such as African Americans. However, causal effect analyses in such populations are often challenged by limited sample sizes, leading to biased or unstable estimates when only target-population data are used. Existing transfer causal learning methods borrow information from a larger related source domain, but may be unstable when source-domain estimation is high-dimensional or when irrelevant covariates introduce noise into transferred nuisance models. We propose a double shrinkage transfer causal learning (DSTCL) estimator that regularizes both the initial source domain estimation and the source-target parameter differences, and then estimates causal effects using a doubly robust framework. We evaluated DSTCL in simulations under varying source sample sizes, inter-domain similarities, covariate dimensions, and other settings, and then applied it to the Alzheimer’s Disease Neuroimaging Initiative dataset using African American participants as the target domain and non-Hispanic White participants as the source domain. In simulations, DSTCL achieved small bias, low mean squared error, and stable confidence interval coverage, generally outperforming competing methods. In the ADNI application, lower baseline ABeta42, reflecting greater amyloid burden, was associated with worse 12-month cognitive performance among African American participants, with DSTCL producing the narrowest confidence interval among the methods compared. These findings suggest that DSTCL provides a practical framework for transfer causal inference in biomedical studies with limited target population.

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Publication Details

Journal
PLoS Computational Biology
Published
2026-08-24
DOI
https://doi.org/10.1371/journal.pcbi.1014706
Primary Topic
Bayesian Modeling and Causal Inference
Type
article
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article

Double shrinkage transfer causal learning: An application to alzheimer’s disease

Yongfu Yu, Guoyou Qin, Lulu Pan, Yunxin Shi et al.
PLoS Computational Biology
Bayesian Modeling and Causal Inference
article

Double shrinkage transfer causal learning: An application to alzheimer’s disease

Yongfu Yu, Guoyou Qin, Lulu Pan, Yunxin Shi, Yu Hu
article en

Abstract

Amyloid-Beta 42 (ABeta42) is a key biomarker of cerebral amyloidosis in Alzheimer’s disease, and estimating its causal effect on subsequent cognitive outcomes is important for understanding disease progression in racial minority populations, such as African Americans. However, causal effect analyses in such populations are often challenged by limited sample sizes, leading to biased or unstable estimates when only target-population data are used. Existing transfer causal learning methods borrow information from a larger related source domain, but may be unstable when source-domain estimation is high-dimensional or when irrelevant covariates introduce noise into transferred nuisance models. We propose a double shrinkage transfer causal learning (DSTCL) estimator that regularizes both the initial source domain estimation and the source-target parameter differences, and then estimates causal effects using a doubly robust framework. We evaluated DSTCL in simulations under varying source sample sizes, inter-domain similarities, covariate dimensions, and other settings, and then applied it to the Alzheimer’s Disease Neuroimaging Initiative dataset using African American participants as the target domain and non-Hispanic White participants as the source domain. In simulations, DSTCL achieved small bias, low mean squared error, and stable confidence interval coverage, generally outperforming competing methods. In the ADNI application, lower baseline ABeta42, reflecting greater amyloid burden, was associated with worse 12-month cognitive performance among African American participants, with DSTCL producing the narrowest confidence interval among the methods compared. These findings suggest that DSTCL provides a practical framework for transfer causal inference in biomedical studies with limited target population.

PLoS Computational BiologyVol. 22(8)
Openalex Percentile: Top 8%
Bayesian Modeling and Causal Inference
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Double shrinkage transfer causal learning: An application to alzheimer’s disease — Yongfu Yu, Guoyou Qin, et al. · PLoS Computational Biology (2026) | TGRS Research Map | TGRS