Rhizosphere Bacterial Communities of Two Coastal Halophytes Under Salinity–Flooding Stress

Soil salinisation and periodic flooding jointly shape coastal wetland ecosystems, but how coexisting halophytes differ in their rhizosphere bacterial communities under these conditions remains insufficiently understood. Here, we investigated rhizosphere bacterial communities associated with Suaeda glauca Bunge and Tamarix chinensis Lour. in saline–alkaline habitats of the Yellow River Delta, China. Twenty quadrat-level rhizosphere samples were collected across four plant–habitat groups, and near-full-length 16S rRNA gene amplicons were sequenced using Pacific Biosciences single-molecule real-time sequencing. Our analysis revealed that hydrological habitat and plant identity together contributed to differences in rhizosphere bacterial community composition. Across the dataset, 2325 bacterial operational taxonomic units were identified. T. chinensis showed higher Shannon and Gini–Simpson diversity, whereas richness patterns depended on habitat and the metric examined. Meanwhile, exploratory genus-level association networks revealed host- and habitat-dependent differences in node number, network density and average degree. PICRUSt2-based functional prediction suggested contrasting predicted functional response patterns: the S. glauca rhizosphere showed 19 significantly altered predicted pathways between flooded and non-flooded habitats, whereas the T. chinensis rhizosphere showed no significant pathway shifts after multiple-testing correction. These findings suggest that coexisting halophytes are associated with divergent rhizosphere bacterial community patterns under saline–alkaline and flooding-associated habitat conditions.