Predicting antibacterial activity of silver nanoparticles using physicochemical descriptors

Quantitative prediction of antibacterial activity in green-synthesized silver nanoparticles (AgNPs) is critical for developing effective and sustainable antimicrobial agents, particularly against multidrug-resistant bacteria. However, variability in synthesis protocols, characterization methods, and biological assays, along with reliance on low-throughput microscopy, limits the ability to systematically link nanoparticle properties to antibacterial performance. Here, we present a materials-informatics framework that predicts inhibition zone diameter using machine-learning models trained on literature-derived datasets. Two complementary descriptor sets were evaluated: structural features from electron microscopy and optical parameters from UV-vis spectroscopy. Ensemble learning models achieved high predictive accuracy, with XGBoost reaching R 2 > 0.94 for microscopy-based descriptors and CatBoost achieving R 2 ≈ 0.93 for optical features. Feature analysis identified nanoparticle size and bacterial concentration as dominant predictors. These findings demonstrate that UV-vis-derived descriptors can provide predictive capability comparable to microscopy-based features, offering a faster, scalable, and sustainable approach for designing and screening antibacterial nanomaterials.

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Journal
iScience
Published
2026-08-20
DOI
https://doi.org/10.1016/j.isci.2026.117194
Primary Topic
Computational Drug Discovery Methods
Type
article
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article

Predicting antibacterial activity of silver nanoparticles using physicochemical descriptors

Getachew Tizazu, Amare Benor, Worku Dagne
iScience
Computational Drug Discovery Methods
article

Predicting antibacterial activity of silver nanoparticles using physicochemical descriptors

Getachew Tizazu, Amare Benor, Worku Dagne
article en

Abstract

Quantitative prediction of antibacterial activity in green-synthesized silver nanoparticles (AgNPs) is critical for developing effective and sustainable antimicrobial agents, particularly against multidrug-resistant bacteria. However, variability in synthesis protocols, characterization methods, and biological assays, along with reliance on low-throughput microscopy, limits the ability to systematically link nanoparticle properties to antibacterial performance. Here, we present a materials-informatics framework that predicts inhibition zone diameter using machine-learning models trained on literature-derived datasets. Two complementary descriptor sets were evaluated: structural features from electron microscopy and optical parameters from UV-vis spectroscopy. Ensemble learning models achieved high predictive accuracy, with XGBoost reaching R 2 > 0.94 for microscopy-based descriptors and CatBoost achieving R 2 ≈ 0.93 for optical features. Feature analysis identified nanoparticle size and bacterial concentration as dominant predictors. These findings demonstrate that UV-vis-derived descriptors can provide predictive capability comparable to microscopy-based features, offering a faster, scalable, and sustainable approach for designing and screening antibacterial nanomaterials.

iScienceVol. 29(9)
Bahir Dar University (ET)
Industry, innovation and infrastructure
Openalex Percentile: Top 8%
Computational Drug Discovery Methods
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