Eleven quick tips for Biomedical Federated Learning

Modern statistical and machine learning techniques are effective at describing, testing hypotheses and making predictions from complex data. This effectiveness is strongly influenced by the volume and heterogeneity of available data. In many fields, including much of biomedicine, large centralized datasets are not available because of cost, privacy, regulatory or other restrictions. In these cases, smaller datasets are distributed across a large number of independent sites. Medical record data is a classic example of this challenge: the total number of patients may be large, but their records are distributed across many health systems and cannot easily be centralized. Federated learning (FL) is a machine learning paradigm that enables training and validation of a shared model in settings of decentralized data. FL can improve model accuracy and generalizability by increasing sample size, but has trade-offs ranging from operational complexity to data-privacy risks to the potential to introduce unexpected imbalances in model accuracy. We outline ten tips for successfully and sustainably implementing FL for Biomedical applications, ensuring both ethical data governance and improved model performance in sensitive domains.

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Publication Details

Journal
PLoS Computational Biology
Published
2026-08-21
DOI
https://doi.org/10.1371/journal.pcbi.1014530
Primary Topic
Privacy-Preserving Technologies in Data
Type
article
Field-Weighted Citation Impact
0.00

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article

Eleven quick tips for Biomedical Federated Learning

Paul C. Boutros, Emek Demir, Kyle Ellrott, Alex Bui et al.
PLoS Computational Biology
Privacy-Preserving Technologies in Data
article

Eleven quick tips for Biomedical Federated Learning

Paul C. Boutros, Emek Demir, Kyle Ellrott, Alex Bui, Serghei Mangul, Jean-Christophe Bélisle-Pipon, Yael Bensoussan, Venkat S. Malladi
article en

Abstract

Modern statistical and machine learning techniques are effective at describing, testing hypotheses and making predictions from complex data. This effectiveness is strongly influenced by the volume and heterogeneity of available data. In many fields, including much of biomedicine, large centralized datasets are not available because of cost, privacy, regulatory or other restrictions. In these cases, smaller datasets are distributed across a large number of independent sites. Medical record data is a classic example of this challenge: the total number of patients may be large, but their records are distributed across many health systems and cannot easily be centralized. Federated learning (FL) is a machine learning paradigm that enables training and validation of a shared model in settings of decentralized data. FL can improve model accuracy and generalizability by increasing sample size, but has trade-offs ranging from operational complexity to data-privacy risks to the potential to introduce unexpected imbalances in model accuracy. We outline ten tips for successfully and sustainably implementing FL for Biomedical applications, ensuring both ethical data governance and improved model performance in sensitive domains.

PLoS Computational BiologyVol. 22(8)
Ştefan cel Mare University of Suceava (RO), Seton Healthcare Family (US), Microsoft (United States) (US), Sage Bionetworks (US), University of California, Los Angeles (US), Oregon Health & Science University (US), Technical University of Moldova (MD), Simon Fraser University (CA), Sanford Burnham Prebys Medical Discovery Institute (US), University of South Florida (US), Discovery Institute (US), Cancer Institute (WIA) (IN)
Ministerul Cercetării, Inovării şi Digitalizării
Openalex Percentile: Top 8%
Privacy-Preserving Technologies in Data
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