Interactive Visualisation of Enzyme Kinetics: A Shiny App for Biomedical, Pharmacology and Biochemistry Education

Understanding enzyme kinetics is fundamental in biomedical science, pharmacology, and biochemistry, yet students often struggle to interpret kinetic models and relate them to biological function. To support learning in this area, an interactive web-based tool, the Kinetics Analysis App, was developed using the Shiny framework in R. The application enables users to input experimental or example data and compare four classical models of enzyme kinetics: Michaelis-Menten, Lineweaver-Burke, Eadie-Hofstee, and Hanes-Woolf. Real-time visualisation of fitted curves and parameter estimates (Vmax and Km) allows learners to explore how model choice, data variability, and substrate concentration influence kinetic interpretation. The tool supports scaffolded, constructivist, and multimedia learning approaches, lowering mathematical barriers and encouraging hypothesis-driven exploration. Designed for integration into laboratory classes, flipped learning, or independent study, the app promotes critical thinking and enhances conceptual understanding of kinetic modelling. Informal student feedback indicates increased confidence and clarity when interpreting enzyme kinetics compared with traditional spreadsheet-based approaches. The Kinetics Analysis App therefore offers a scalable and accessible method to improve quantitative skills and deepen pedagogical engagement with enzyme kinetics.

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Publication Details

Journal
AJP Advances in Physiology Education
Published
2026-08-21
DOI
https://doi.org/10.1152/advan.00294.2025
Primary Topic
Various Chemistry Research Topics
Type
article
Field-Weighted Citation Impact
0.00

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article

Interactive Visualisation of Enzyme Kinetics: A Shiny App for Biomedical, Pharmacology and Biochemistry Education

Claire Price, Aidan Seeley, J. Gareth Noble
AJP Advances in Physiology Education
Various Chemistry Research Topics
article

Interactive Visualisation of Enzyme Kinetics: A Shiny App for Biomedical, Pharmacology and Biochemistry Education

Claire Price, Aidan Seeley, J. Gareth Noble
article en

Abstract

Understanding enzyme kinetics is fundamental in biomedical science, pharmacology, and biochemistry, yet students often struggle to interpret kinetic models and relate them to biological function. To support learning in this area, an interactive web-based tool, the Kinetics Analysis App, was developed using the Shiny framework in R. The application enables users to input experimental or example data and compare four classical models of enzyme kinetics: Michaelis-Menten, Lineweaver-Burke, Eadie-Hofstee, and Hanes-Woolf. Real-time visualisation of fitted curves and parameter estimates (Vmax and Km) allows learners to explore how model choice, data variability, and substrate concentration influence kinetic interpretation. The tool supports scaffolded, constructivist, and multimedia learning approaches, lowering mathematical barriers and encouraging hypothesis-driven exploration. Designed for integration into laboratory classes, flipped learning, or independent study, the app promotes critical thinking and enhances conceptual understanding of kinetic modelling. Informal student feedback indicates increased confidence and clarity when interpreting enzyme kinetics compared with traditional spreadsheet-based approaches. The Kinetics Analysis App therefore offers a scalable and accessible method to improve quantitative skills and deepen pedagogical engagement with enzyme kinetics.

AJP Advances in Physiology Education
Swansea University (GB)
British Pharmacological Society
Quality Education
Openalex Percentile: Top 12%
Various Chemistry Research Topics
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