Genetic and behavioural repertoires support olfactory communication in wild capuchin monkeys

Olfaction is a key sense for many mammals, but its role in the social lives of anthropoid primates (monkeys, apes, humans) is poorly understood. Studies of chemosensory receptor genes and olfactory behaviours can provide insight into the evolution and function of olfaction across social contexts. Vomeronasal receptor (VR) genes are especially relevant to social behaviour as they are specialized for the detection of pheromones and other cues involved in social signaling, reproductive behaviour, and individual recognition in mammals. Here, we examined the population genetics and gene repertoires of VR genes in wild white-faced capuchin monkeys (Cebus imitator) from Costa Rica and Panama using DNA sourced through both host tissues and through noninvasive fluorescence-activated cell sorting of fecal samples (fecalFACS). We compared VR diversity relative to putatively neutral reference loci (NRs) to investigate evidence of selection and potential effects of demography. To complement the genetic analysis, we also conducted a detailed observational study of capuchin olfactory behaviours. Combined, we find evidence of intact VRs subject to evolutionary constraint in capuchins, providing novel evidence that members of this gene family are maintained by evolutionary constraint in wild monkeys. We further document a rich and varied ethogram of olfactory behaviours that have clear potential for communication. Overall, our study provides compelling evidence for a role of olfaction in the complex social lives of capuchin monkeys, motivating future research on the contributions of olfaction to social communication and evolution in primates and other mammals.

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Publication Details

Journal
bioRxiv (Cold Spring Harbor Laboratory)
Published
2026-09-14
DOI
https://doi.org/10.64898/2026.09.08.750240
Primary Topic
Olfactory and Sensory Function Studies
Type
preprint

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preprint

Genetic and behavioural repertoires support olfactory communication in wild capuchin monkeys

Meg Crofoot, Joseph D. Orkin, Nelle K. Kulick, Gabriel Benson et al.
bioRxiv (Cold Spring Harbor Laboratory)
Olfactory and Sensory Function Studies
preprint

Genetic and behavioural repertoires support olfactory communication in wild capuchin monkeys

Meg Crofoot, Joseph D. Orkin, Nelle K. Kulick, Gabriel Benson, Alice C. Poirier, Muhammad Shoaib Akhtar, Katherine M. Jack, Thore J. Bergman, Brendan J. Barrett, Saúl Cheves Hernández, Hadjira Hamou, Jenny Tung, Amanda Melin, Catalina Chaves-Cordero, Carlota F. Galán-Plana, Raquel Hernandez-Rojas, Suheidy Romero Morales, Valeria Villero
preprint en

Abstract

Olfaction is a key sense for many mammals, but its role in the social lives of anthropoid primates (monkeys, apes, humans) is poorly understood. Studies of chemosensory receptor genes and olfactory behaviours can provide insight into the evolution and function of olfaction across social contexts. Vomeronasal receptor (VR) genes are especially relevant to social behaviour as they are specialized for the detection of pheromones and other cues involved in social signaling, reproductive behaviour, and individual recognition in mammals. Here, we examined the population genetics and gene repertoires of VR genes in wild white-faced capuchin monkeys (Cebus imitator) from Costa Rica and Panama using DNA sourced through both host tissues and through noninvasive fluorescence-activated cell sorting of fecal samples (fecalFACS). We compared VR diversity relative to putatively neutral reference loci (NRs) to investigate evidence of selection and potential effects of demography. To complement the genetic analysis, we also conducted a detailed observational study of capuchin olfactory behaviours. Combined, we find evidence of intact VRs subject to evolutionary constraint in capuchins, providing novel evidence that members of this gene family are maintained by evolutionary constraint in wild monkeys. We further document a rich and varied ethogram of olfactory behaviours that have clear potential for communication. Overall, our study provides compelling evidence for a role of olfaction in the complex social lives of capuchin monkeys, motivating future research on the contributions of olfaction to social communication and evolution in primates and other mammals.

bioRxiv (Cold Spring Harbor Laboratory)
Tulane University (US), Texas Parks and Wildlife Department (US), William & Mary (US), University of Calgary (CA), University of Michigan (US), Universidad de Costa Rica (CR), Guanacaste Conservation Area (CR), Max Planck Institute of Animal Behavior (DE), Max Planck Institute for Evolutionary Anthropology (DE), Virginia Sea Grant (US), Université de Montréal (CA)
National Science Foundation, Smithsonian Institution, University of Calgary, Canadian Food Inspection Agency, Canada Research Chairs, Smithsonian Tropical Research Institute, Natural Sciences and Engineering Research Council of Canada
Olfactory and Sensory Function Studies
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