Orbital Tuningof the β-Lactam Warhead:Intrinsic n → π* Preactivation in Cephalosporins
Abstract The stability–reactivity paradox of β-lactam antibiotics remains a fundamental puzzle in medicinal chemistry: how can cephalosporins maintain high antibacterial efficacy despite having reduced ring strain compared to penicillins? Here, we reveal the intrinsic conformational architecture of 7-aminodesacetoxycephalosporanic acid (7-ADCA), the foundational core of cephalosporins, using laser ablation broadband rotational spectroscopy and high-level quantum chemical calculations. In a striking departure from the hydrogen-bond-mediated activation observed in penicillins, we discovered that 7-ADCA can be electronically preactivated by a subtle n → π* orbital interaction between the carboxylic oxygen and the β-lactam carbonyl. This interaction selectively weakens the amide bond without compromising the scaffold’s overall stability, offering an evolutionary trade-off superior to the fragile penicillin nucleus. A comprehensive survey of the Protein Data Bank (PDB) confirms that this gas-phase geometry not only is the biologically operative pharmacophore but also is adopted by approximately 70% of enzyme-bound cephalosporins. These findings provide insights into the electronic features of the cephalosporin core and offer a structural template consistent with its bioactivity, potentially aiding in the rational design of next-generation antibiotics through subangstrom orbital tuning.
Authors
- Elena R. Alonso (ORCID: https://orcid.org/0000-0001-5816-4102)
- Sergio Mato (ORCID: https://orcid.org/0000-0001-8200-7043)
- Íker León (ORCID: https://orcid.org/0000-0002-1992-935X)
- Sofía Municio (ORCID: https://orcid.org/0009-0005-5823-1578)
- J. L. Alonso
Institutions
- Universidad de Valladolid (ES)
Publication Details
- Journal
- The Journal of Physical Chemistry Letters
- Published
- 2026-08-17
- DOI
- https://doi.org/10.1021/acs.jpclett.6c01886
- Primary Topic
- Molecular Spectroscopy and Structure
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- Fundación General Universidad de Valladolid
- Banco Santander
- Ministerio de Ciencia, Innovación y Universidades
- Universidad de Valladolid
- Junta de Castilla y León
- Centro Singular de Investigación de Galicia
- European Regional Development Fund
- European Social Fund