<i>Q</i> performance 2: Toward Unbiased Selection of Machine-LearningRegression Models

Abstract Selecting a single best machine-learning regression model from a set of competing models can be challenging. While models selected based on cross-validation performance do not guarantee good predictions on external data, models selected solely on external validation performance do not ascertain precise predictions for other external sets. Therefore, we propose three quantitative metrics to guide modelers in selecting the best model using the modeling set information only. Three quantitative data sets of varying sizes and complexities were considered. Each data set was randomly split into a modeling set and an independent test set. The modeling set was further split thrice to generate training and validation sets. Various machine-learning models were developed and validated against the validation sets. Our proposed metrics were computed for each model using only training and validation set performances. The novel metric values guided the selection of the best models, which also demonstrated expected performance on the independent test set. Furthermore, successful applications of our framework on two additional benchmark data sets demonstrated its wider generalizability.

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Publication Details

Journal
Journal of Chemical Information and Modeling
Published
2026-08-14
DOI
https://doi.org/10.1021/acs.jcim.6c01964
Primary Topic
Machine Learning and Data Classification
Type
article
Field-Weighted Citation Impact
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article

Q performance 2: Toward Unbiased Selection of Machine-LearningRegression Models

Arkaprava Banerjee, Kunal Roy
Journal of Chemical Information and Modeling
Machine Learning and Data Classification
article

Q performance 2: Toward Unbiased Selection of Machine-LearningRegression Models

Arkaprava Banerjee, Kunal Roy
article en

Abstract

Abstract Selecting a single best machine-learning regression model from a set of competing models can be challenging. While models selected based on cross-validation performance do not guarantee good predictions on external data, models selected solely on external validation performance do not ascertain precise predictions for other external sets. Therefore, we propose three quantitative metrics to guide modelers in selecting the best model using the modeling set information only. Three quantitative data sets of varying sizes and complexities were considered. Each data set was randomly split into a modeling set and an independent test set. The modeling set was further split thrice to generate training and validation sets. Various machine-learning models were developed and validated against the validation sets. Our proposed metrics were computed for each model using only training and validation set performances. The novel metric values guided the selection of the best models, which also demonstrated expected performance on the independent test set. Furthermore, successful applications of our framework on two additional benchmark data sets demonstrated its wider generalizability.

Journal of Chemical Information and Modeling
Jadavpur University (IN)
Openalex Percentile: Top 8%
Machine Learning and Data Classification
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<i>Q</i> performance 2: Toward Unbiased Selection of Machine-LearningRegression Models — Arkaprava Banerjee, Kunal Roy · Journal of Chemical Information and Modeling (2026) | TGRS Research Map | TGRS