Carbapenemase-producing <b>Klebsiella oxytoca</b> complex in France (2017–2023): Molecular epidemiology integrated with virulence and biofilm phenotypes
OBJECTIVES: This study analysed a large French collection of carbapenemase-producing Klebsiella oxytoca complex (KoC) isolates (2017-2023) to map species and carbapenemase distributions and identify emerging lineages. We further investigated virulence traits to understand the epidemiological success of the dominant ST-2 lineage. METHODS: We conducted a retrospective study of all KoC isolates received at the French National Reference Center for Antimicrobial Resistance from 2017 to 2023. Whole-genome sequencing was performed to assess species assignment, phylogeny, and sequence types. Virulence analyses included biofilm formation assays (on abiotic surfaces and eukaryotic cells) and Galleria mellonella infection models. RESULTS: remained the most prevalent species among the KoC. OXA-48-like enzymes were the most common carbapenemases, and two major lineages predominated: ST-141 and, far ahead, ST-2. The success of ST-2 appears linked to its low virulence combined with a strong capacity for long-term persistence. CONCLUSION: Our findings confirm that K. oxytoca comprises a complex of distinct species whose taxonomy warrants continued revision. ST-2 circulates widely in France and, despite its limited virulence, shows remarkable persistence, making it an epidemiological important lineage.
Authors
- Delphine Girlich (ORCID: https://orcid.org/0000-0002-7698-2798)
- Inès Rezzoug (ORCID: https://orcid.org/0009-0006-9484-7932)
- Agnès B. Jousset (ORCID: https://orcid.org/0000-0002-8223-2213)
- Rémy A. Bonnin (ORCID: https://orcid.org/0000-0002-2307-3232)
- Joséphine Poiraud
- Aymeric Jacquemin
- Cécile Emeraud (ORCID: https://orcid.org/0009-0006-3595-6434)
- Lena Latour
- Haniel Defoi
- Benoit Pilmis
- Laurent Dortet
- Subidsha Nandakumaran
- Aurelien Birer
- Océane Vanparis
Institutions
- Inserm (FR)
- Commissariat à l'Énergie Atomique et aux Énergies Alternatives (FR)
- Université Paris-Saclay (FR)
- Assistance Publique – Hôpitaux de Paris (FR)
- Hôpital Marie Lannelongue (FR)
- CEA Paris-Saclay (FR)
- CNR de la Résistance aux Antibiotiques (FR)
- Comprehensive Clinical Research (US)
Publication Details
- Journal
- Emerging Microbes & Infections
- Published
- 2026-08-03
- DOI
- https://doi.org/10.1080/22221751.2026.2713319
- Primary Topic
- Antibiotic Resistance in Bacteria
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- Agence Nationale de la Recherche