Spatiotemporal modelling of soil organic carbon: integrating process-based and machine learning approaches

Soil organic carbon (SOC) underpins the global carbon cycle and represents a central lever for climate change mitigation and food security. Yet its accurate spatiotemporal quantification remains a challenge, owing to the complex interactions among biological, chemical and physical processes operating across scales. This review critically evaluates the current state of SOC spatiotemporal modelling frameworks and their limitations, and future directions. Process-based models provide mechanistic insight into carbon dynamics but are constrained by parameterisation, structural assumptions and computational demands. In contrast, machine-learning (ML) approaches excel at capturing spatial patterns from large datasets but often struggle to represent temporal kinetics, enforce physical consistency or generalise across scales and environmental contexts. We argue that the next generation of SOC modelling will emerge from the convergence of process-based understanding and data-driven inference through knowledge-guided ML and hybrid modelling strategies. We synthesise four principal integration pathways: (1) meta -modelling to accelerate computationally intensive simulations; (2) sequential hybridisation to embed mechanistic trends as dynamic covariates; (3) ensemble frameworks to reduce structural uncertainty; and (4) data assimilation to constrain model trajectories with observations. We further highlight emerging frontiers, including residual and parameter learning, physics-informed neural networks, foundation models for earth observations, and omics-informed frameworks that link microbial functional potential to carbon turnover processes. We conclude that progress toward causally interpretable, uncertainty-aware monitoring frameworks will require tighter integration of mechanistic theory, interpretable artificial intelligence and cross-scale data synthesis.

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Publication Details

Journal
Geoderma
Published
2026-07-30
DOI
https://doi.org/10.1016/j.geoderma.2026.117967
Primary Topic
Soil Geostatistics and Mapping
Type
article
Field-Weighted Citation Impact
0.00

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article

Spatiotemporal modelling of soil organic carbon: integrating process-based and machine learning approaches

Yuxin Ma, Lei Zhang, Nicolas Saby, Zhongkui Luo et al.
Geoderma
Soil Geostatistics and Mapping
article

Spatiotemporal modelling of soil organic carbon: integrating process-based and machine learning approaches

Yuxin Ma, Lei Zhang, Nicolas Saby, Zhongkui Luo, Wartini Ng, Bas van Wesemael, Songchao Chen, Yue Zhou, Zhou Shi, Yuanyuan Du, Budiman Minasny, Zheng Wang
article en

Abstract

Soil organic carbon (SOC) underpins the global carbon cycle and represents a central lever for climate change mitigation and food security. Yet its accurate spatiotemporal quantification remains a challenge, owing to the complex interactions among biological, chemical and physical processes operating across scales. This review critically evaluates the current state of SOC spatiotemporal modelling frameworks and their limitations, and future directions. Process-based models provide mechanistic insight into carbon dynamics but are constrained by parameterisation, structural assumptions and computational demands. In contrast, machine-learning (ML) approaches excel at capturing spatial patterns from large datasets but often struggle to represent temporal kinetics, enforce physical consistency or generalise across scales and environmental contexts. We argue that the next generation of SOC modelling will emerge from the convergence of process-based understanding and data-driven inference through knowledge-guided ML and hybrid modelling strategies. We synthesise four principal integration pathways: (1) meta -modelling to accelerate computationally intensive simulations; (2) sequential hybridisation to embed mechanistic trends as dynamic covariates; (3) ensemble frameworks to reduce structural uncertainty; and (4) data assimilation to constrain model trajectories with observations. We further highlight emerging frontiers, including residual and parameter learning, physics-informed neural networks, foundation models for earth observations, and omics-informed frameworks that link microbial functional potential to carbon turnover processes. We conclude that progress toward causally interpretable, uncertainty-aware monitoring frameworks will require tighter integration of mechanistic theory, interpretable artificial intelligence and cross-scale data synthesis.

GeodermaVol. 473
Centre National de la Recherche Scientifique (FR), The University of Sydney (AU), NSW Department of Planning and Environment (AU), Lawrence Berkeley National Laboratory (US), Zhejiang University of Science and Technology (CN), Sydney Water (AU), UNSW Sydney (AU), Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement (FR), Institut Pierre-Simon Laplace (FR), Soil Science Research Unit (FR), Info&Sols (FR), Zhejiang University (CN), UCLouvain (BE)
National Natural Science Foundation of China
Climate action
Openalex Percentile: Top 15%
Soil Geostatistics and Mapping
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