Dynamic Calibration of a Spatial SEIQR Model via Bayesian Optimization: Analyzing the Behavioral Gap in Argentina's COVID-19 Pandemic

The COVID-19 pandemic highlighted the limitations of static epidemiological models in capturing shifting human behaviors and non-pharmaceutical interventions. This paper presents a spatial stochastic SEIQR model calibrated dynamically using Bayesian Optimization via the Optuna framework. By dividing a 600-day simulation into 30 temporal windows of 20 days, we optimized key behavioral parameters: mobility ($\nu$) and social friction/care ($KT$). This dynamic calibration achieved a 20% to 30% reduction in the Mean Squared Error (MSE) compared to static approaches. Furthermore, our analysis introduces the "Vulnerability Gap" ($\Delta = \nu_t - KT_t$), demonstrating that the pandemic's severity was largely driven by behavioral fatigue and late social reactivity, transforming abstract mathematical variables into direct proxies for historical epidemiological milestones.

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-07-30
DOI
https://doi.org/10.5281/zenodo.21708167
Primary Topic
COVID-19 epidemiological studies
Type
preprint
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preprint

Dynamic Calibration of a Spatial SEIQR Model via Bayesian Optimization: Analyzing the Behavioral Gap in Argentina's COVID-19 Pandemic

Wilson Andres Lombardo
Zenodo (CERN European Organization for Nuclear Research)
COVID-19 epidemiological studies
preprint

Dynamic Calibration of a Spatial SEIQR Model via Bayesian Optimization: Analyzing the Behavioral Gap in Argentina's COVID-19 Pandemic

Wilson Andres Lombardo
preprint en

Abstract

The COVID-19 pandemic highlighted the limitations of static epidemiological models in capturing shifting human behaviors and non-pharmaceutical interventions. This paper presents a spatial stochastic SEIQR model calibrated dynamically using Bayesian Optimization via the Optuna framework. By dividing a 600-day simulation into 30 temporal windows of 20 days, we optimized key behavioral parameters: mobility ($\nu$) and social friction/care ($KT$). This dynamic calibration achieved a 20% to 30% reduction in the Mean Squared Error (MSE) compared to static approaches. Furthermore, our analysis introduces the "Vulnerability Gap" ($\Delta = \nu_t - KT_t$), demonstrating that the pandemic's severity was largely driven by behavioral fatigue and late social reactivity, transforming abstract mathematical variables into direct proxies for historical epidemiological milestones.

Zenodo (CERN European Organization for Nuclear Research)
Good health and well-being
COVID-19 epidemiological studies
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