Leveraging G$$\times$$E interaction to optimize multi-trait selection in lima bean

Climate variability and the increasing demand for resilient crops have intensified the need for breeding strategies that accelerate genetic gains. Lima bean, a protein-rich legume adapted to low-input farming systems, is a strategic crop for food security in tropical and semiarid regions. However, genotype-by-environment (G \(\times\) E) interaction remains a major obstacle to identifying responsive and stable genotypes. This study investigated G \(\times\) E interaction in 40 lima bean breeding lines cultivated across three contrasting Brazilian agroecological regions and identified superior ideotypes through integrated multi-trait selection approaches. Field trials were conducted in Piracicaba (SP), Teresina (PI), and Tianguá (CE), Brazil, using a randomized complete block design with three replications. Variance components were estimated by restricted maximum likelihood (REML), and genotypic values were predicted as best linear unbiased predictions (BLUPs) using mixed models. Genotype plus genotype-by-environment interaction (GGE) biplot analysis was then used to assess genotype performance and stability across environments. Simultaneous multi-trait selection employed the genotype-by-trait (GT) biplot and the desired-gain index, integrating agronomic, phenological, and yield-related traits into a unified breeding framework. The Likelihood Ratio Test detected significant G \(\times\) E interaction for all evaluated traits, revealing contrasting genotypic responses among environments. Combined multi-trait approaches detected lines L20, L27, L21, L06, and L13 as promising candidates because of their superior grain yield, suitable trait profiles, and enhanced phenotypic stability.

Authors

Institutions

Publication Details

Journal
Scientific Reports
Published
2026-07-28
DOI
https://doi.org/10.1038/s41598-026-58678-6
Primary Topic
Genetics and Plant Breeding
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Leveraging G$$\times$$E interaction to optimize multi-trait selection in lima bean

M. I. Zucchi, J. Pavan, Mauricio S. Araújo, Dayana R. Sousa et al.
Scientific Reports
Genetics and Plant Breeding
article

Leveraging G$$\times$$E interaction to optimize multi-trait selection in lima bean

M. I. Zucchi, J. Pavan, Mauricio S. Araújo, Dayana R. Sousa, José B. Pinheiro, Gérson N.C. Ferreira, Yasmim I. Retore, Ângela C. A. Lopes, Vanessa G. Moura, Michelle S. Nascimento, Josieli L. Silva, Maria S. S. Silva, Regina L. F. Gomes, José T. B. Chagas
article en

Abstract

Climate variability and the increasing demand for resilient crops have intensified the need for breeding strategies that accelerate genetic gains. Lima bean, a protein-rich legume adapted to low-input farming systems, is a strategic crop for food security in tropical and semiarid regions. However, genotype-by-environment (G \(\times\) E) interaction remains a major obstacle to identifying responsive and stable genotypes. This study investigated G \(\times\) E interaction in 40 lima bean breeding lines cultivated across three contrasting Brazilian agroecological regions and identified superior ideotypes through integrated multi-trait selection approaches. Field trials were conducted in Piracicaba (SP), Teresina (PI), and Tianguá (CE), Brazil, using a randomized complete block design with three replications. Variance components were estimated by restricted maximum likelihood (REML), and genotypic values were predicted as best linear unbiased predictions (BLUPs) using mixed models. Genotype plus genotype-by-environment interaction (GGE) biplot analysis was then used to assess genotype performance and stability across environments. Simultaneous multi-trait selection employed the genotype-by-trait (GT) biplot and the desired-gain index, integrating agronomic, phenological, and yield-related traits into a unified breeding framework. The Likelihood Ratio Test detected significant G \(\times\) E interaction for all evaluated traits, revealing contrasting genotypic responses among environments. Combined multi-trait approaches detected lines L20, L27, L21, L06, and L13 as promising candidates because of their superior grain yield, suitable trait profiles, and enhanced phenotypic stability.

Scientific Reports
Universidade de São Paulo (BR), Universidade Federal do Piauí (BR), Forest Science and Research Institute (BR)
Climate action
Openalex Percentile: Top 10%
Genetics and Plant Breeding
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.