ImmuneSpace in 2026: A Centralized Repository for Curated Human Immune-Profiling Data 2310296

Abstract Introduction ImmuneSpace (immunespace.org) is a freely accessible database that hosts curated human immune-profiling data from a wide range of studies. It was created as the central data repository of the Human Immunology Project Consortium (HIPC), a multi-center NIH-funded program to characterize the diverse states of the human immune system and its regulation, using consistently formatted data [PMID: 23648045]. The overarching goal is to investigate human immune perturbations using state-of-the-art systems-level profiling technologies and innovative methodologies, and to make these data available to the scientific community, accessible for both humans and machines. Methods ImmuneSpace hosts data related to immunological exposure, demographics, cytokine profiling, cytometry, and neutralizing antibody assays. It builds on the ImmPort data model, a long-term archive of research and clinical data for the NIH [PMID: 29485622], but implements additional standardization and normalization rules, following the HIPC Data Standards initiative [PMID: 22343568, 26861911, 31272390, 32283555]. Results ImmuneSpace is continuously updated with data and features. Each study undergoes enhanced curation to ensure consistent use of ontology-based terminology, enabling more efficient queries both within and across studies. Study components stored in different repositories, unparsed raw data, and computationally inaccessible elements are integrated through manual curation, such as study timelines and author-determined ‘immune signatures’. Recently, we have added the ‘Finder Feature’ which simplifies complex searches through a hierarchical, tree-based interface that allows users to visually browse, search with autocomplete, or select entire branches of categorized filters while providing definitions, synonyms, and ontology links. Conclusion The HIPC Project and the ImmuneSpace platform demonstrate the feasibility and benefits of a structured approach to representing human immunological studies to elucidate system-level phenomena. Funding Source U01 AI167892 Topic Categories Computational and Systems Immunology (COMP)

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Publication Details

Journal
The Journal of Immunology
Published
2026-07-28
DOI
https://doi.org/10.1093/jimmun/vkag141.1734
Primary Topic
vaccines and immunoinformatics approaches
Type
article
Field-Weighted Citation Impact
0.00
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article

ImmuneSpace in 2026: A Centralized Repository for Curated Human Immune-Profiling Data 2310296

Mari Kojima, Leying Guan, Anaïs Gambiez, Kalpana Raja et al.
The Journal of Immunology
vaccines and immunoinformatics approaches
article

ImmuneSpace in 2026: A Centralized Repository for Curated Human Immune-Profiling Data 2310296

Mari Kojima, Leying Guan, Anaïs Gambiez, Kalpana Raja, Kerstin Westendorf, Steven Kleinstein, Jason Greenbaum, Randi Vita, Pramod Shinde, Brrendan Ha, Bjoern Peters, James Overton, Robert McDougal
article en

Abstract

Abstract Introduction ImmuneSpace (immunespace.org) is a freely accessible database that hosts curated human immune-profiling data from a wide range of studies. It was created as the central data repository of the Human Immunology Project Consortium (HIPC), a multi-center NIH-funded program to characterize the diverse states of the human immune system and its regulation, using consistently formatted data [PMID: 23648045]. The overarching goal is to investigate human immune perturbations using state-of-the-art systems-level profiling technologies and innovative methodologies, and to make these data available to the scientific community, accessible for both humans and machines. Methods ImmuneSpace hosts data related to immunological exposure, demographics, cytokine profiling, cytometry, and neutralizing antibody assays. It builds on the ImmPort data model, a long-term archive of research and clinical data for the NIH [PMID: 29485622], but implements additional standardization and normalization rules, following the HIPC Data Standards initiative [PMID: 22343568, 26861911, 31272390, 32283555]. Results ImmuneSpace is continuously updated with data and features. Each study undergoes enhanced curation to ensure consistent use of ontology-based terminology, enabling more efficient queries both within and across studies. Study components stored in different repositories, unparsed raw data, and computationally inaccessible elements are integrated through manual curation, such as study timelines and author-determined ‘immune signatures’. Recently, we have added the ‘Finder Feature’ which simplifies complex searches through a hierarchical, tree-based interface that allows users to visually browse, search with autocomplete, or select entire branches of categorized filters while providing definitions, synonyms, and ontology links. Conclusion The HIPC Project and the ImmuneSpace platform demonstrate the feasibility and benefits of a structured approach to representing human immunological studies to elucidate system-level phenomena. Funding Source U01 AI167892 Topic Categories Computational and Systems Immunology (COMP)

The Journal of ImmunologyVol. 215(Supplement_1)
La Jolla Institute for Immunology (US), Yale University (US)
Partnerships for the goals
Openalex Percentile: Top 14%
vaccines and immunoinformatics approaches
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