Differentiable Grand-Canonical Monte Carlo with Importance-Sampled Insertions for Gas Adsorption in Porous Materials

Gas adsorption in porous materials is naturally modeled in the grand-canonical ensemble. We give a compact, self-contained derivation of Metropolis-Hastings acceptance criteria for insertion, deletion, and displacement moves, including nonuniform insertion proposals based on a mixture of Gaussians (MoG) matched to pore geometry. We clarify where indistinguishability and the de Broglie wavelength enter, and show how observables map to adsorption isotherms, isosteric heats, number-fluctuation compressibilities, and the grand potential Ω. Beyond the formulas, we provide a computationally efficient, differentiable reference implementation in JAX and JAX molecular dynamics (JAX-MD), featuring periodic boundaries, cutoff-shifted Lennard-Jones interactions, and static, mask-based arrays amenable to just-in-time compilation (jit) and vectorized mapping (vmap) calculations. We include pragmatic diagnostics (autocorrelation-aware uncertainties, effective sample sizes, acceptance ratios), per-pore and voxel-resolved estimators, visualizations of pores and configurations. The open-source implementation is available online. The full source code, scripts, RASPA2 input files, CIFs, and raw benchmark JSON outputs are accessible at the link above.

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Publication Details

Journal
Journal of Chemical Theory and Computation
Published
2026-07-26
DOI
https://doi.org/10.1021/acs.jctc.6c00671
Primary Topic
Phase Equilibria and Thermodynamics
Type
article
Field-Weighted Citation Impact
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article

Differentiable Grand-Canonical Monte Carlo with Importance-Sampled Insertions for Gas Adsorption in Porous Materials

Egor I. Tuzharov, Anastasia V. Bochenkova, Yury Maximov
Journal of Chemical Theory and Computation
Phase Equilibria and Thermodynamics
article

Differentiable Grand-Canonical Monte Carlo with Importance-Sampled Insertions for Gas Adsorption in Porous Materials

Egor I. Tuzharov, Anastasia V. Bochenkova, Yury Maximov
article en

Abstract

Gas adsorption in porous materials is naturally modeled in the grand-canonical ensemble. We give a compact, self-contained derivation of Metropolis-Hastings acceptance criteria for insertion, deletion, and displacement moves, including nonuniform insertion proposals based on a mixture of Gaussians (MoG) matched to pore geometry. We clarify where indistinguishability and the de Broglie wavelength enter, and show how observables map to adsorption isotherms, isosteric heats, number-fluctuation compressibilities, and the grand potential Ω. Beyond the formulas, we provide a computationally efficient, differentiable reference implementation in JAX and JAX molecular dynamics (JAX-MD), featuring periodic boundaries, cutoff-shifted Lennard-Jones interactions, and static, mask-based arrays amenable to just-in-time compilation (jit) and vectorized mapping (vmap) calculations. We include pragmatic diagnostics (autocorrelation-aware uncertainties, effective sample sizes, acceptance ratios), per-pore and voxel-resolved estimators, visualizations of pores and configurations. The open-source implementation is available online. The full source code, scripts, RASPA2 input files, CIFs, and raw benchmark JSON outputs are accessible at the link above.

Journal of Chemical Theory and Computation
Lomonosov Moscow State University (RU), InterDigital (United States) (US)
Sustainable cities and communities
Openalex Percentile: Top 16%
Phase Equilibria and Thermodynamics
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