Genetically Encoded Pentafluorophenylalanine Enables Quantitative Probing of Local Protein Malleability by <sup>19</sup> F NMR

F NMR spectra enable direct, quantitative measurements of ring-flip kinetics without the need for isotope labeling or complex multidimensional experiments. Application to a diverse set of proteins demonstrates that ring-flip rates vary widely even within the same hydrophobic cluster, revealing highly localized conformational fluctuations rather than global unfolding events. Pressure-dependent measurements yield small activation volumes, indicating that the structural rearrangements enabling ring flips are spatially confined. Ligand binding and protein-protein interactions modulate ring-flip rates in a site-specific manner, providing a sensitive readout of allosteric effects on local protein malleability. These results establish fluorinated aromatic amino acids as a general chemical strategy to engineer dynamic observables in proteins, transforming aromatic ring flips into a broadly applicable probe of local conformational dynamics and allostery.

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Publication Details

Journal
Journal of the American Chemical Society
Published
2026-07-26
DOI
https://doi.org/10.1021/jacs.6c10121
Primary Topic
Protein Structure and Dynamics
Type
article
Field-Weighted Citation Impact
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article

Genetically Encoded Pentafluorophenylalanine Enables Quantitative Probing of Local Protein Malleability by 19 F NMR

Edan Habel, James L. Baber, Gottfried Otting, Rebecca L. Frkic et al.
Journal of the American Chemical Society
Protein Structure and Dynamics
article

Genetically Encoded Pentafluorophenylalanine Enables Quantitative Probing of Local Protein Malleability by 19 F NMR

Edan Habel, James L. Baber, Gottfried Otting, Rebecca L. Frkic, Colin J. Jackson, Haocheng Qianzhu, Elwy H. Abdelkader, Nathan Paul, Thomas Huber, Nicholas F. Chilton, Ad Bax, Toby R. C. Thompson, Luca Macri, Adarshi P. Welegedara
article en

Abstract

F NMR spectra enable direct, quantitative measurements of ring-flip kinetics without the need for isotope labeling or complex multidimensional experiments. Application to a diverse set of proteins demonstrates that ring-flip rates vary widely even within the same hydrophobic cluster, revealing highly localized conformational fluctuations rather than global unfolding events. Pressure-dependent measurements yield small activation volumes, indicating that the structural rearrangements enabling ring flips are spatially confined. Ligand binding and protein-protein interactions modulate ring-flip rates in a site-specific manner, providing a sensitive readout of allosteric effects on local protein malleability. These results establish fluorinated aromatic amino acids as a general chemical strategy to engineer dynamic observables in proteins, transforming aromatic ring flips into a broadly applicable probe of local conformational dynamics and allostery.

Journal of the American Chemical Society
Australian National University (AU), University of Manchester (GB), ARC Centre of Excellence for Innovations in Peptide and Protein Science (AU)
Openalex Percentile: Top 14%
Protein Structure and Dynamics
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