Genetically Encoded Pentafluorophenylalanine Enables Quantitative Probing of Local Protein Malleability by <sup>19</sup> F NMR
F NMR spectra enable direct, quantitative measurements of ring-flip kinetics without the need for isotope labeling or complex multidimensional experiments. Application to a diverse set of proteins demonstrates that ring-flip rates vary widely even within the same hydrophobic cluster, revealing highly localized conformational fluctuations rather than global unfolding events. Pressure-dependent measurements yield small activation volumes, indicating that the structural rearrangements enabling ring flips are spatially confined. Ligand binding and protein-protein interactions modulate ring-flip rates in a site-specific manner, providing a sensitive readout of allosteric effects on local protein malleability. These results establish fluorinated aromatic amino acids as a general chemical strategy to engineer dynamic observables in proteins, transforming aromatic ring flips into a broadly applicable probe of local conformational dynamics and allostery.
Authors
- Edan Habel (ORCID: https://orcid.org/0009-0007-9215-8225)
- James L. Baber
- Gottfried Otting (ORCID: https://orcid.org/0000-0002-0563-0146)
- Rebecca L. Frkic (ORCID: https://orcid.org/0000-0003-0071-9018)
- Colin J. Jackson (ORCID: https://orcid.org/0000-0001-6150-3822)
- Haocheng Qianzhu (ORCID: https://orcid.org/0000-0002-7546-4411)
- Elwy H. Abdelkader (ORCID: https://orcid.org/0000-0002-5388-3949)
- Nathan Paul
- Thomas Huber (ORCID: https://orcid.org/0000-0002-3680-8699)
- Nicholas F. Chilton (ORCID: https://orcid.org/0000-0002-8604-0171)
- Ad Bax (ORCID: https://orcid.org/0000-0002-9809-5700)
- Toby R. C. Thompson (ORCID: https://orcid.org/0009-0004-1746-4685)
- Luca Macri
- Adarshi P. Welegedara
Institutions
- Australian National University (AU)
- University of Manchester (GB)
- ARC Centre of Excellence for Innovations in Peptide and Protein Science (AU)
Publication Details
- Journal
- Journal of the American Chemical Society
- Published
- 2026-07-26
- DOI
- https://doi.org/10.1021/jacs.6c10121
- Primary Topic
- Protein Structure and Dynamics
- Type
- article
- Field-Weighted Citation Impact
- 0.00