Genomic structural variation rescues a classic biological invader from a population bottleneck

) in Guam represents a notable example of this phenomenon, having been introduced with only a handful of individuals. We show that the population endured an extreme bottleneck, with roughly half of the genome exhibiting runs of homozygosity, comparable to species of conservation concern. Despite this, we uncovered extensive diversity in the form of nearly 19,000 genomic structural variants, which affect almost eight times more of the genome than single-nucleotide variants and provide material for "rescuing" the population from inbreeding-driven declines. Structural variant density was highest in gene promoters, where recombination and DNA repair often occur, providing a mechanism for rapid evolution of gene-linked diversity. This diversity is enriched in genes vital for adaptive immunity and olfaction, suggesting genomic diversity in key chromosomal regions can rescue populations from inbreeding. This work has critical implications for invasion biology and conservation genetics practitioners.

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Publication Details

Journal
Science Advances
Published
2026-07-24
DOI
https://doi.org/10.1126/sciadv.aed3656
Primary Topic
Amphibian and Reptile Biology
Type
article
Field-Weighted Citation Impact
0.00

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article

Genomic structural variation rescues a classic biological invader from a population bottleneck

Melia G. Nafus, Christopher Osborne, M. Renee Bellinger, Sarah L. Chang et al.
Science Advances
Amphibian and Reptile Biology
article

Genomic structural variation rescues a classic biological invader from a population bottleneck

Melia G. Nafus, Christopher Osborne, M. Renee Bellinger, Sarah L. Chang, Levi N. Gray, Steven J. Fleck, Brian M. Foote, Hannah Waterman, Trevor J. Krabbenhoft
article en

Abstract

) in Guam represents a notable example of this phenomenon, having been introduced with only a handful of individuals. We show that the population endured an extreme bottleneck, with roughly half of the genome exhibiting runs of homozygosity, comparable to species of conservation concern. Despite this, we uncovered extensive diversity in the form of nearly 19,000 genomic structural variants, which affect almost eight times more of the genome than single-nucleotide variants and provide material for "rescuing" the population from inbreeding-driven declines. Structural variant density was highest in gene promoters, where recombination and DNA repair often occur, providing a mechanism for rapid evolution of gene-linked diversity. This diversity is enriched in genes vital for adaptive immunity and olfaction, suggesting genomic diversity in key chromosomal regions can rescue populations from inbreeding. This work has critical implications for invasion biology and conservation genetics practitioners.

Science AdvancesVol. 12(30)
Hawaii Pacific University (US), NOAA National Marine Fisheries Service Pacific Islands Fisheries Science Center (US), University at Buffalo, State University of New York (US)
University at Buffalo
Life in Land
Openalex Percentile: Top 10%
Amphibian and Reptile Biology
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Genomic structural variation rescues a classic biological invader from a population bottleneck — Melia G. Nafus, Christopher Osborne, et al. · Science Advances (2026) | TGRS Research Map | TGRS