Investigation of Substrate Specificity in 5‐Keto‐4‐Deoxy‐Glucarate Dehydratase and 2‐Keto‐3‐Deoxy‐L‐Arabinonate Dehydratase

5-Keto-4-deoxy glucarate dehydratase and 2-keto-3-deoxy-L-arabinonate dehydratase are members of the dihydrodipicolinate synthase superfamily of aldolase class I enzymes. The enzymes are part of the oxidative nonphosphorylated metabolic pathways for the production of 2-ketoglutarate from glucuronic acid and arabinose, respectively. They carry out a C4 dehydration on their substrates, 5-keto-4-deoxy glucarate and 2-keto-3-deoxy-L-arabinonate, and produce the same product, ketoglutarate semialdehyde. While the enzymes are similar in structure and reaction mechanism, they exhibit a high substrate specificity and have only been reported to be active on their native substrate. In order to investigate the high substrate specificity, we aimed to generate promiscuous variants of both enzymes that can accept multiple substrates and investigate the evolutionary development of the substrate specificity in the superfamily. Ancestral sequence reconstruction and GFN2-xTB calculations were used to develop candidates for further analysis of substrate scope. Both approaches yielded multiple promiscuous dehydratases with activity on both substrates.

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Journal
ChemBioChem
Published
2026-07-24
DOI
https://doi.org/10.1002/cbic.70472
Primary Topic
Enzyme Structure and Function
Type
article
Field-Weighted Citation Impact
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article

Investigation of Substrate Specificity in 5‐Keto‐4‐Deoxy‐Glucarate Dehydratase and 2‐Keto‐3‐Deoxy‐L‐Arabinonate Dehydratase

Sílvia Osuna, Kathrin Hörnschemeyer, Mikael Bodén, Volker Sieber et al.
ChemBioChem
Enzyme Structure and Function
article

Investigation of Substrate Specificity in 5‐Keto‐4‐Deoxy‐Glucarate Dehydratase and 2‐Keto‐3‐Deoxy‐L‐Arabinonate Dehydratase

Sílvia Osuna, Kathrin Hörnschemeyer, Mikael Bodén, Volker Sieber, Esther Pruna
article en

Abstract

5-Keto-4-deoxy glucarate dehydratase and 2-keto-3-deoxy-L-arabinonate dehydratase are members of the dihydrodipicolinate synthase superfamily of aldolase class I enzymes. The enzymes are part of the oxidative nonphosphorylated metabolic pathways for the production of 2-ketoglutarate from glucuronic acid and arabinose, respectively. They carry out a C4 dehydration on their substrates, 5-keto-4-deoxy glucarate and 2-keto-3-deoxy-L-arabinonate, and produce the same product, ketoglutarate semialdehyde. While the enzymes are similar in structure and reaction mechanism, they exhibit a high substrate specificity and have only been reported to be active on their native substrate. In order to investigate the high substrate specificity, we aimed to generate promiscuous variants of both enzymes that can accept multiple substrates and investigate the evolutionary development of the substrate specificity in the superfamily. Ancestral sequence reconstruction and GFN2-xTB calculations were used to develop candidates for further analysis of substrate scope. Both approaches yielded multiple promiscuous dehydratases with activity on both substrates.

ChemBioChemVol. 27(14)
Institució Catalana de Recerca i Estudis Avançats (ES), The University of Queensland (AU), Universitat de Girona (ES), Stadtwerke Straubing (Germany) (DE)
Deutsche Forschungsgemeinschaft
Openalex Percentile: Top 19%
Enzyme Structure and Function
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Investigation of Substrate Specificity in 5‐Keto‐4‐Deoxy‐Glucarate Dehydratase and 2‐Keto‐3‐Deoxy‐L‐Arabinonate Dehydratase — Sílvia Osuna, Kathrin Hörnschemeyer, et al. · ChemBioChem (2026) | TGRS Research Map | TGRS