A Practical Noise2Noise Denoising Pipeline for High‐Throughput Raman Spectroscopy

A lightweight and reproducible denoising pipeline for high‐throughput Raman spectroscopy is presented. The approach relies on a 1D convolutional autoencoder trained using a Noise2Noise strategy, requiring neither external spectral libraries nor high signal‐to‐noise reference spectra for training. From a reduced training subset composed of repeated short‐exposure acquisitions, the model learns to reconstruct Raman spectra while efficiently suppressing stochastic noise. The method is evaluated on a heterogeneous mineral sample, using both quantitative spectral fidelity metrics (RMSE, SNR, SSIM) and task‐oriented criteria based on unsupervised K‐means classification. Results demonstrate that integration times as short as 5 ms per spectrum, which are typically insufficient for reliable interpretation, yield denoised spectra with high fidelity to the reference data while preserving chemically coherent maps. This work provides a practical trade‐off between spectral quality and acquisition speed, enabling fast, adaptable Raman workflows compatible with routine laboratory use. It also offers a transferable framework for other 1D spectroscopic modalities.

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Publication Details

Journal
Advanced Engineering Materials
Published
2026-07-23
DOI
https://doi.org/10.1002/adem.71032
Primary Topic
Spectroscopy Techniques in Biomedical and Chemical Research
Type
article
Field-Weighted Citation Impact
0.00

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article

A Practical Noise2Noise Denoising Pipeline for High‐Throughput Raman Spectroscopy

Christophe Dujardin, Jérémie Margueritat, David Rodney, César Álvarez-Llamas et al.
Advanced Engineering Materials
Spectroscopy Techniques in Biomedical and Chemical Research
article

A Practical Noise2Noise Denoising Pipeline for High‐Throughput Raman Spectroscopy

Christophe Dujardin, Jérémie Margueritat, David Rodney, César Álvarez-Llamas, David Martin-Calle, Vincent Motto‐Ros
article en

Abstract

A lightweight and reproducible denoising pipeline for high‐throughput Raman spectroscopy is presented. The approach relies on a 1D convolutional autoencoder trained using a Noise2Noise strategy, requiring neither external spectral libraries nor high signal‐to‐noise reference spectra for training. From a reduced training subset composed of repeated short‐exposure acquisitions, the model learns to reconstruct Raman spectra while efficiently suppressing stochastic noise. The method is evaluated on a heterogeneous mineral sample, using both quantitative spectral fidelity metrics (RMSE, SNR, SSIM) and task‐oriented criteria based on unsupervised K‐means classification. Results demonstrate that integration times as short as 5 ms per spectrum, which are typically insufficient for reliable interpretation, yield denoised spectra with high fidelity to the reference data while preserving chemically coherent maps. This work provides a practical trade‐off between spectral quality and acquisition speed, enabling fast, adaptable Raman workflows compatible with routine laboratory use. It also offers a transferable framework for other 1D spectroscopic modalities.

Advanced Engineering Materials
Université Claude Bernard Lyon 1 (FR), Centre National de la Recherche Scientifique (FR), Institut Universitaire de France (FR), Institut Lumière Matière (FR)
Agence Nationale de la Recherche
Openalex Percentile: Top 10%
Spectroscopy Techniques in Biomedical and Chemical Research
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