A multi-site loiasis dataset of whole blood videos

Loiasis is a blood-borne filarial infection under consideration for inclusion in the WHO’s priority list of Neglected Tropical Diseases. In addition to its direct impact on human health, loiasis frequently occurs as a co-infection with other filarial diseases, including onchocerciasis (river blindness) and lymphatic filariasis (LF, elephantiasis). This overlapping geographic distribution seriously hinders mass drug administration (MDA) with ivermectin (IVM) for onchocerciasis and LF control, because individuals with Loa loa microfilarial (mf) loads exceeding 30,000 mf/mL are at high risk of developing severe adverse events, including coma and death, following IVM treatment. Therefore, safe MDA in loiasis co-endemic areas requires active detection and exclusion of high L. loa mf individuals from treatment, the so-called Test and Not Treat (TaNT) strategy. Automated, AI-driven diagnostics have shown strong potential to enhance TaNT implementation and fill a crucial care need for underserved populations, yet important performance limitations remain. To support AI research for the pressing health care needs of filarial diseases, we release this first-of-its-kind dataset to enable development of AI algorithms for detecting L. loa in whole blood samples. The dataset includes over 33,000 videos of whole blood in capillaries, in 4705 sessions (7 videos per session) from 1948 patients, captured by NTDscope portable imaging devices during four studies in 2023 and 2025 in Cameroon and Gabon. The videos contain a range of L. loa microfilariae counts and negative cases, as well as some cases with Mansonella perstans, another tropical filarial parasite. The metadata include expert microfilariae counts from Giemsa-stained blood films for each patient.

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Publication Details

Journal
The Journal of Machine Learning for Biomedical Imaging
Published
2026-09-21
DOI
https://doi.org/10.59275/j.melba.2026-b66d
Primary Topic
Parasitic Diseases Research and Treatment
Type
article
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article

A multi-site loiasis dataset of whole blood videos

María Díaz de León Derby, Ghyslain Mombo‐Ngoma, Joseph Kamgno, Karla N. Fisher et al.
The Journal of Machine Learning for Biomedical Imaging
Parasitic Diseases Research and Treatment
article

A multi-site loiasis dataset of whole blood videos

María Díaz de León Derby, Ghyslain Mombo‐Ngoma, Joseph Kamgno, Karla N. Fisher, Ethan Spencer, Daniel A. Fletcher, Isaac I. Bogoch, Charles B. Delahunt, Linda Djune-Yemeli, Zaina L. Moussa, Rella Zoleko-Manego, Steve M. Tchana, Anne-Laure Le Ny, Yannick Y. Nzeuhang, Yves A. Balog, Donald F. Fankam, Saskia Deda David, Jean G. Bopda, Dipayan Banik, Matthew D. Keller, Mbakam S. Laetitia, Michael Ramharter
article en

Abstract

Loiasis is a blood-borne filarial infection under consideration for inclusion in the WHO’s priority list of Neglected Tropical Diseases. In addition to its direct impact on human health, loiasis frequently occurs as a co-infection with other filarial diseases, including onchocerciasis (river blindness) and lymphatic filariasis (LF, elephantiasis). This overlapping geographic distribution seriously hinders mass drug administration (MDA) with ivermectin (IVM) for onchocerciasis and LF control, because individuals with Loa loa microfilarial (mf) loads exceeding 30,000 mf/mL are at high risk of developing severe adverse events, including coma and death, following IVM treatment. Therefore, safe MDA in loiasis co-endemic areas requires active detection and exclusion of high L. loa mf individuals from treatment, the so-called Test and Not Treat (TaNT) strategy. Automated, AI-driven diagnostics have shown strong potential to enhance TaNT implementation and fill a crucial care need for underserved populations, yet important performance limitations remain. To support AI research for the pressing health care needs of filarial diseases, we release this first-of-its-kind dataset to enable development of AI algorithms for detecting L. loa in whole blood samples. The dataset includes over 33,000 videos of whole blood in capillaries, in 4705 sessions (7 videos per session) from 1948 patients, captured by NTDscope portable imaging devices during four studies in 2023 and 2025 in Cameroon and Gabon. The videos contain a range of L. loa microfilariae counts and negative cases, as well as some cases with Mansonella perstans, another tropical filarial parasite. The metadata include expert microfilariae counts from Giemsa-stained blood films for each patient.

The Journal of Machine Learning for Biomedical ImagingVol. 2026(MICCAI Open Data 2026)
University Health Network (CA), Universität Hamburg (DE), University of Toronto (CA), University of Washington (US), Toronto General Hospital (CA), Centre de Recherche Médicales de Lambaréné (GA), University Medical Center Hamburg-Eppendorf (DE), German Center for Infection Research (DE), Bernhard Nocht Institute for Tropical Medicine (DE), University of California, Berkeley (US)
Reduced inequalities
Openalex Percentile: Top 32%
Parasitic Diseases Research and Treatment
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