Free Energies of Solvation in Cyclohexane and Water: United-Atom vs All-Atom

in comparison to experimental data are ca. 0.5 kcal/mol for both force fields. This supports general use of the UA model, since it reduces the required computation times by 5-10-fold. The largest errors are about 1 kcal/mol and occur for small molecules with relatively large dipole moments and for perfluorocarbons. The former case is attributable to the lack of solvent-polarization in the force fields, and the latter issue can be remedied by reducing the Lennard-Jones well depth for the interaction of saturated carbon and fluorine. Results for free energies of hydration are also provided for the 101 solutes in TIP4P water and the average error is again 0.5 kcal/mol. The combined results provide cyclohexane/water free energies of transfer with average errors of 0.7 kcal/mol. In conjunction with prior results for solvation in benzene and perfluorobenzene, the 0.5 kcal/mol level of accuracy seems general for the performance of current generation, nonpolarizable force fields. Implications for modeling hydrophobic effects and protein-ligand binding are also considered.

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Publication Details

Journal
Journal of Chemical Theory and Computation
Published
2026-07-23
DOI
https://doi.org/10.1021/acs.jctc.6c00989
Primary Topic
Protein Structure and Dynamics
Type
article
Field-Weighted Citation Impact
0.00

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article

Free Energies of Solvation in Cyclohexane and Water: United-Atom vs All-Atom

William L. Jorgensen, Julian Tirado‐Rives
Journal of Chemical Theory and Computation
Protein Structure and Dynamics
article

Free Energies of Solvation in Cyclohexane and Water: United-Atom vs All-Atom

William L. Jorgensen, Julian Tirado‐Rives
article en

Abstract

in comparison to experimental data are ca. 0.5 kcal/mol for both force fields. This supports general use of the UA model, since it reduces the required computation times by 5-10-fold. The largest errors are about 1 kcal/mol and occur for small molecules with relatively large dipole moments and for perfluorocarbons. The former case is attributable to the lack of solvent-polarization in the force fields, and the latter issue can be remedied by reducing the Lennard-Jones well depth for the interaction of saturated carbon and fluorine. Results for free energies of hydration are also provided for the 101 solutes in TIP4P water and the average error is again 0.5 kcal/mol. The combined results provide cyclohexane/water free energies of transfer with average errors of 0.7 kcal/mol. In conjunction with prior results for solvation in benzene and perfluorobenzene, the 0.5 kcal/mol level of accuracy seems general for the performance of current generation, nonpolarizable force fields. Implications for modeling hydrophobic effects and protein-ligand binding are also considered.

Journal of Chemical Theory and Computation
Yale University (US)
National Institutes of Health
Clean water and sanitation
Openalex Percentile: Top 15%
Protein Structure and Dynamics
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