Novel Hydrazone Derivative with 4-(4-Aminophenoxy)-N-methylpicolinamide Moiety: Spectroscopic, Molecular Dynamics, and Docking Studies for Potential Anticancer Activity

Protein kinases such as RAF1 and VEGFR2 regulate key pathways in cell prolifera-tion, differentiation, and angiogenesis, making them promising cancer targets. However, kinase inhibitor efficacy is often limited by off-target effects, poor pharmacokinetics, and resistance. Hydrazone derivatives, with structural flexibility and multi-target potential, offer a valuable scaffold. Here, we designed and syn-thesized a novel hydrazone incorporating the 4-(4-aminophenoxy)-N-methylpicolinamide pharmacophore to achieve selective kinase inhibition. The compound was characterized via 1H/13C-NMR, FT-IR, and mass spectrometry, confirming its structure and purity. DFT (B3LYP/6-311++G(d,p)) calculations sup-ported the experimental data, providing optimized geometry and electronic in-sights. Molecular docking against RAF1 (PDB: 4ASD) and VEGFR2 (PDB: 5HI2) indicated strong binding through hydrogen bonds, π–π stacking, and hydrophobic interactions. Molecular dynamics simulations (100 ns, YASARA) confirmed lig-and–protein complex stability, minimal RMSD fluctuations, and consistent hydro-gen bond occupancy under physiological conditions.

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Publication Details

Journal
Sakarya University Journal of Science
Published
2026-07-22
DOI
https://doi.org/10.16984/saufenbilder.1843089
Primary Topic
Melanoma and MAPK Pathways
Type
article
Field-Weighted Citation Impact
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article

Novel Hydrazone Derivative with 4-(4-Aminophenoxy)-N-methylpicolinamide Moiety: Spectroscopic, Molecular Dynamics, and Docking Studies for Potential Anticancer Activity

Tolga A. Yeşil, Tahir Tilki, Ömer Dilek
Sakarya University Journal of Science
Melanoma and MAPK Pathways
article

Novel Hydrazone Derivative with 4-(4-Aminophenoxy)-N-methylpicolinamide Moiety: Spectroscopic, Molecular Dynamics, and Docking Studies for Potential Anticancer Activity

Tolga A. Yeşil, Tahir Tilki, Ömer Dilek
article en

Abstract

Protein kinases such as RAF1 and VEGFR2 regulate key pathways in cell prolifera-tion, differentiation, and angiogenesis, making them promising cancer targets. However, kinase inhibitor efficacy is often limited by off-target effects, poor pharmacokinetics, and resistance. Hydrazone derivatives, with structural flexibility and multi-target potential, offer a valuable scaffold. Here, we designed and syn-thesized a novel hydrazone incorporating the 4-(4-aminophenoxy)-N-methylpicolinamide pharmacophore to achieve selective kinase inhibition. The compound was characterized via 1H/13C-NMR, FT-IR, and mass spectrometry, confirming its structure and purity. DFT (B3LYP/6-311++G(d,p)) calculations sup-ported the experimental data, providing optimized geometry and electronic in-sights. Molecular docking against RAF1 (PDB: 4ASD) and VEGFR2 (PDB: 5HI2) indicated strong binding through hydrogen bonds, π–π stacking, and hydrophobic interactions. Molecular dynamics simulations (100 ns, YASARA) confirmed lig-and–protein complex stability, minimal RMSD fluctuations, and consistent hydro-gen bond occupancy under physiological conditions.

Sakarya University Journal of Science(Advanced Online Publication)
Isparta University of Applied Sciences (TR), Suleyman Demirel University (KZ), Sinop University (TR)
Openalex Percentile: Top 14%
Melanoma and MAPK Pathways
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