Bootstrapping multimodal large language model with medical knowledge for automatic esophagogastroduodenoscopy diagnosis and reporting

Esophagogastroduodenoscopy (EGD) is an essential clinical procedure for diagnosing gastrointestinal (GI) diseases, while the subsequent EGD reports play a vital role in clinical decision-making and therapeutic interventions. This paper makes the first attempt to bootstrap Multimodal Large Language Models (MLLM) with medical knowledge for EGD diagnosis and reporting (EDR). We collected the largest multicentric EGD dataset so far, containing 4461 participants with 203,838 EGD images and 4461 corresponding EGD reports. Experimental results demonstrate that the proposed method, MLLM-EDR, achieves an average diagnostic accuracy of 0.882 for nineteen GI diseases, outperforming both state-of-the-art AI models (0.720) and junior endoscopists (0.784). The completeness and facticity scores of our generated reports match the quality of those created by senior endoscopists. Moreover, our method substantially reduces the endoscopists’ workload from 7 minutes to 13.48 seconds. These results highlight the vigor and significance of MLLM-EDR for AI-assisted EGD diagnostic and reporting applications. This paper bootstraps multimodal large language models with medical knowledge for esophagogastroduodenoscopy diagnosis and reporting, achieving accurate diagnosis of 19 gastrointestinal diseases and producing comprehensive descriptions of the findings

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Publication Details

Journal
Nature Communications
Published
2026-07-17
DOI
https://doi.org/10.1038/s41467-026-75377-y
Primary Topic
Colorectal Cancer Screening and Detection
Type
article
Field-Weighted Citation Impact
0.00

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article

Bootstrapping multimodal large language model with medical knowledge for automatic esophagogastroduodenoscopy diagnosis and reporting

Yikun Ma, Shuchang Xu, Zijie Yue, Hanli Wang et al.
Nature Communications
Colorectal Cancer Screening and Detection
article

Bootstrapping multimodal large language model with medical knowledge for automatic esophagogastroduodenoscopy diagnosis and reporting

Yikun Ma, Shuchang Xu, Zijie Yue, Hanli Wang, Tianyu Cen, Huihui Sun, Jun Wang, Yuehua Chen, Miaojing Shi, XC Wu, Bo Li
article en

Abstract

Esophagogastroduodenoscopy (EGD) is an essential clinical procedure for diagnosing gastrointestinal (GI) diseases, while the subsequent EGD reports play a vital role in clinical decision-making and therapeutic interventions. This paper makes the first attempt to bootstrap Multimodal Large Language Models (MLLM) with medical knowledge for EGD diagnosis and reporting (EDR). We collected the largest multicentric EGD dataset so far, containing 4461 participants with 203,838 EGD images and 4461 corresponding EGD reports. Experimental results demonstrate that the proposed method, MLLM-EDR, achieves an average diagnostic accuracy of 0.882 for nineteen GI diseases, outperforming both state-of-the-art AI models (0.720) and junior endoscopists (0.784). The completeness and facticity scores of our generated reports match the quality of those created by senior endoscopists. Moreover, our method substantially reduces the endoscopists’ workload from 7 minutes to 13.48 seconds. These results highlight the vigor and significance of MLLM-EDR for AI-assisted EGD diagnostic and reporting applications. This paper bootstraps multimodal large language models with medical knowledge for esophagogastroduodenoscopy diagnosis and reporting, achieving accurate diagnosis of 19 gastrointestinal diseases and producing comprehensive descriptions of the findings

Nature Communications
Tongji University (CN), Tongji Hospital (CN)
National Natural Science Foundation of China, China Postdoctoral Science Foundation, Tongji University, Shanghai Municipal Commission of Economy and Informatization, Fundamental Research Funds for the Central Universities
Peace, Justice and strong institutions
Openalex Percentile: Top 11%
Colorectal Cancer Screening and Detection
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