Probing the Human 4-Oxo- <scp>l</scp> -proline Reductase-Catalyzed Reaction by Deuterium Kinetic and Equilibrium Isotope Effects

High Resolution Image Download MS PowerPoint Slide Human 4-oxo- l -proline reductase ( Hs BDH2), a short-chain dehydrogenase/reductase (SDR) superfamily member possessing a canonical N–S–Y–K catalytic tetrad, catalyzes the formation of the endogenous anticancer compound cis -4-hydroxy- l -proline via the NADH-dependent reduction of 4-oxo- l -proline. Except for hydride-transfer stereochemistry, information on the Hs BDH2 chemical step remains elusive. Here, deuterium isotope effects are employed to gather information on the hydride-transfer step of the reaction. Primary and α-secondary equilibrium isotope effects were inverse and normal, respectively, consistent with the 4 S -[ 2 H] accumulating on cis -4-hydroxy- l -proline and the 4 R -[ 2 H] on NADH. Primary kinetic isotope effects, with 4 S -[4- 2 H]NADH, on k cat ( D k cat ) and k cat / K M ( D ( k cat / K M 4OLP )) were small, indicating that hydride transfer is fast relative to other catalytic steps. Internal-competition equilibrium binding isotope effects were inverse with 4 S -[4- 2 H]NADH and normal with 4 R -[4- 2 H]NADH, suggesting that Hs BDH2 tight binding distorts the pro- S hydrogen to a more constrained bonding environment, while the opposite happens to the pro- R hydrogen. Both levulinate and pyruvate were low-affinity, slow-reaction substrates; while a D ( k cat / K M ) of 2.6 and a D k cat of 2.5 were determined with the former, modest values were obtained with the latter. Using NADPH as a coenzyme resulted in a similar k cat, but drastically increased K M . Accordingly, 4 S -[4- 2 H]NADPH increased D ( k cat / K M NADPH ) to 1.5, while D k cat remained small. The N105A substitution, proposed to affect coenzyme binding in SDRs, increased K M for NADH and doubled k cat . The D ( k cat / K M ) increased to 2.5 and D k cat to 2.0. The D 2 O k cat with 4 S -[4- 2 H]NADH decreased from its value with NADH, suggesting stepwise hydride-transfer and proton-transfer steps. These results expand the role of N105 in Hs BDH2 and possibly other SDRs.

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Journal
Biochemistry
Published
2026-07-16
DOI
https://doi.org/10.1021/acs.biochem.6c00491
Primary Topic
Enzyme Structure and Function
Type
article
Field-Weighted Citation Impact
0.00

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article

Probing the Human 4-Oxo- l -proline Reductase-Catalyzed Reaction by Deuterium Kinetic and Equilibrium Isotope Effects

Rafael G. da Silva, Ennio Pečaver, David J. Harrison, Myriam Kabu et al.
Biochemistry
Enzyme Structure and Function
article

Probing the Human 4-Oxo- l -proline Reductase-Catalyzed Reaction by Deuterium Kinetic and Equilibrium Isotope Effects

Rafael G. da Silva, Ennio Pečaver, David J. Harrison, Myriam Kabu, Greice M. Zickuhr
article en

Abstract

High Resolution Image Download MS PowerPoint Slide Human 4-oxo- l -proline reductase ( Hs BDH2), a short-chain dehydrogenase/reductase (SDR) superfamily member possessing a canonical N–S–Y–K catalytic tetrad, catalyzes the formation of the endogenous anticancer compound cis -4-hydroxy- l -proline via the NADH-dependent reduction of 4-oxo- l -proline. Except for hydride-transfer stereochemistry, information on the Hs BDH2 chemical step remains elusive. Here, deuterium isotope effects are employed to gather information on the hydride-transfer step of the reaction. Primary and α-secondary equilibrium isotope effects were inverse and normal, respectively, consistent with the 4 S -[ 2 H] accumulating on cis -4-hydroxy- l -proline and the 4 R -[ 2 H] on NADH. Primary kinetic isotope effects, with 4 S -[4- 2 H]NADH, on k cat ( D k cat ) and k cat / K M ( D ( k cat / K M 4OLP )) were small, indicating that hydride transfer is fast relative to other catalytic steps. Internal-competition equilibrium binding isotope effects were inverse with 4 S -[4- 2 H]NADH and normal with 4 R -[4- 2 H]NADH, suggesting that Hs BDH2 tight binding distorts the pro- S hydrogen to a more constrained bonding environment, while the opposite happens to the pro- R hydrogen. Both levulinate and pyruvate were low-affinity, slow-reaction substrates; while a D ( k cat / K M ) of 2.6 and a D k cat of 2.5 were determined with the former, modest values were obtained with the latter. Using NADPH as a coenzyme resulted in a similar k cat, but drastically increased K M . Accordingly, 4 S -[4- 2 H]NADPH increased D ( k cat / K M NADPH ) to 1.5, while D k cat remained small. The N105A substitution, proposed to affect coenzyme binding in SDRs, increased K M for NADH and doubled k cat . The D ( k cat / K M ) increased to 2.5 and D k cat to 2.0. The D 2 O k cat with 4 S -[4- 2 H]NADH decreased from its value with NADH, suggesting stepwise hydride-transfer and proton-transfer steps. These results expand the role of N105 in Hs BDH2 and possibly other SDRs.

Biochemistry
University of St Andrews (GB), ICAR Research Complex for NEH Region (IN), Nucana (United Kingdom) (GB), Indiana University School of Medicine
Medical Research Scotland, University of St Andrews
Openalex Percentile: Top 18%
Enzyme Structure and Function
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